PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28826-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 228aa    MW: 26627.8 Da    PI: 7.1089
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28826-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.23.3e-141031381853
                      HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox  18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      +F+ ++yp+++ r++L+++lg++ +qVk+WFqN+R+
  TRIUR3_28826-P1 103 VFQDCPYPNEKLRKDLSERLGMSAQQVKFWFQNKRT 138
                      6**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-1555138IPR009057Homeodomain-like
SuperFamilySSF466892.48E-1158138IPR009057Homeodomain-like
SMARTSM003899.8E-870147IPR001356Homeobox domain
CDDcd000865.97E-1172137No hitNo description
PfamPF000462.7E-11103138IPR001356Homeobox domain
PROSITE profilePS5007112.649104143IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MDGDNSGVHN EFDLFMTSTH NHLFQHNHSD EMDDLLGAST IVGNTDDANV VVADHDNNDG  60
ETHSEQRMAT RRAKYHRLRS EQIQQLEAYN TYSINVSYLA KIVFQDCPYP NEKLRKDLSE  120
RLGMSAQQVK FWFQNKRTIN KGKMQRWETQ NCWVENEKLK TERQAIMLAM QNKTCLKCRG  180
VMVQTQHTSE FQRLYTENMR LKEELLHATA YLKEGLRRNG MSLPSAHD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-89HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153975.11e-140homeobox-leucine zipper protein MERISTEM L1-like
TrEMBLM7ZMH11e-173M7ZMH1_TRIUA; Homeobox-leucine zipper protein ROC4
STRINGTRIUR3_28826-P11e-173(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16772512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.21e-26HD-ZIP family protein