PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28905-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 214aa    MW: 24132.4 Da    PI: 9.698
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28905-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.21.3e-145183133
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                     C++C++ +Tp+ R gp g+ tLCnaCG++y+  
  TRIUR3_28905-P1 51 CTHCRVEDTPQGRTGPAGSGTLCNACGIRYKMG 83
                     *******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-104595IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.1984582IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-1147107No hitNo description
Gene3DG3DSA:3.30.50.106.0E-124984IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.52E-1150106No hitNo description
PfamPF003206.4E-125184IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSAGAYDCNG DSNANDDKDK DYVLSHCKKG RRNGGPRQAR RQQKKTEDKI CTHCRVEDTP  60
QGRTGPAGSG TLCNACGIRY KMGKLFPEYR PSTSPEFSSL EHSNRHRNVE RIREKKKKMK  120
VMAPEVPEMS AVIYVNIRSS TPGGWMQLGC NVIVALFSFA WKNSCDIRSK FVYSEPFENL  180
KHAESVPWRL HGKISVYLVS HCMFNYVNSA VSSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149935.11e-141GATA transcription factor 8-like
TrEMBLM7YQ581e-160M7YQ58_TRIUA; GATA transcription factor 5
STRINGTRIUR3_28905-P11e-161(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-25GATA transcription factor 4