PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29037-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 677aa    MW: 74128.5 Da    PI: 8.6879
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29037-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06110130425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      ++C+ff++ G C yG++C++ H
  TRIUR3_29037-P1 110 RPCKFFLA-GDCTYGEKCRYPH 130
                      79******.**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0542853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.4E-5107131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023108132IPR000571Zinc finger, CCCH-type
SuperFamilySSF509787.69E-31136297IPR017986WD40-repeat-containing domain
SMARTSM003209.9E-7137176IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.107.1E-29139320IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004008.6E-6141176IPR001680WD40 repeat
PROSITE profilePS5008214.318144185IPR001680WD40 repeat
PROSITE profilePS5029413.158144185IPR017986WD40-repeat-containing domain
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
SMARTSM00320190179214IPR001680WD40 repeat
SMARTSM003205.2216253IPR001680WD40 repeat
SMARTSM003202.2260297IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.107.1E-29449450IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM00320360576629IPR001680WD40 repeat
SuperFamilySSF509787.69E-31577670IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.107.1E-29613669IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM0032034632669IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGAD GGVRHKVPDR PCKFFLAGDC  120
TYGEKCRYPH TYCMSNSITL LTPLQGHEKV VTGIALPAGS DKLYSGSKDG TVRLWDCQTG  180
QCAGVLPVGG EVGCMISEGP WLFVGIPDAV KVWNMQTQAE MNLTGPTGQV YALAIGNELL  240
FAATQDGRIL AWRFSTVTNC FEPAASLTGH QLAVVSLIVG GMRLYSGSMD KTIRVRHCYY  300
GCCSPASHIT LEFRVAAHFN NLLILHMQAQ HLYGVRNLHT SIHVNLSTIE LEYLNQTKAV  360
LEFLLKQEKL HSPVLGLRKL DLIVAVGSWD LWWERRKLVH GEATQIAMVV RSLVMQRPTH  420
QKQLLNRVSG QTPTPRNFVK PNVDAAFDAD TPQGAVCAVV PDGSGKFIAA ADSHIKWCSD  480
VLTAKASRGV SVLEKLPEKF FPETIDLRWI ESSGKEKDEA QPWPSVGDFG GASLRVDARE  540
GGGQEKEAVV PVARQRNLQT VRRHFLFLRE DEPRVSSRTL KTWKFPCGND ADRDGEFMVG  600
ALALTGMPDA QSKPVLVCSL NDNTVRLYDL PSFSDRGRIF SKQEIRAIQT GPGGLFFTGD  660
GTGELKVWQW IIDASQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B7e-11141303192351F-box/WD repeat protein 7
2ovq_B7e-11141303192351F-box/WD repeat protein 7
2ovr_B7e-11141303192351F-box/WD repeat protein 7
5v4b_B7e-11141303192351F-box/WD repeat-containing protein 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594520.0AK359452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1097E17.
GenBankAK3627330.0AK362733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162465.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-166C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLM7ZSB80.0M7ZSB8_TRIUA; Zinc finger CCCH domain-containing protein 17
STRINGTRIUR3_29037-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-101C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]