PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29043-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 210aa    MW: 22943.5 Da    PI: 10.4887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29043-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1660105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  TRIUR3_29043-P1  60 RGHWRPAEDMKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 105
                      899*****************************.***********996 PP
2Myb_DNA-binding53.84.5e-17113155246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  TRIUR3_29043-P1 113 RPFSDEEEERLMAAHRFYGNK-WSMIARLFP-GRTDNAVKNHWHV 155
                      68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.92955106IPR017930Myb domain
SuperFamilySSF466891.54E-2859153IPR009057Homeodomain-like
SMARTSM007177.4E-1459108IPR001005SANT/Myb domain
PfamPF002495.2E-1660105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2661113IPR009057Homeodomain-like
CDDcd001673.97E-1363104No hitNo description
PROSITE profilePS5129424.958107161IPR017930Myb domain
SMARTSM007175.5E-13111159IPR001005SANT/Myb domain
PfamPF002493.7E-13112154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-21114160IPR009057Homeodomain-like
CDDcd001678.94E-11114154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVAANDDQAS SSSSSKGGGA VLTTGTATID KGYLGGGGAG SNAADPQESS SSGQSRHAAR  60
GHWRPAEDMK LRELVALYGP QNWNLIAEKL DGRSGKSCRL RWFNQLDPRI SKRPFSDEEE  120
ERLMAAHRFY GNKWSMIARL FPGRTDNAVK NHWHVIMARK YREQSIAYRR RKLNQAVQRT  180
LDSSSGVAAG PGAASNSVHD GRLSWPDAMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32591606107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-142HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184298.11e-117transcription factor MYB21-like
SwissprotQ9SEZ46e-72MY105_ARATH; Transcription factor MYB105
TrEMBLT1NEN51e-153T1NEN5_TRIUA; Uncharacterized protein
STRINGTRIUR3_29043-P11e-154(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.14e-73myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]