PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_29073-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 94aa MW: 10595 Da PI: 10.8068

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_29073-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	134.1	1.7e-41	10	78	102	170
YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++++++ +p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl TRIUR3_29073-P1 10 QQETEQSAKSAPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 78 4455566666777******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.3E-39	11	78	IPR006780	YABBY protein
SuperFamily	SSF47095	1.2E-8	20	72	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.3E-5	27	70	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MPMPAAKPAQ QETEQSAKSA PSANRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDITHREA 60 FSAAAKNWAH FPHIHFGLMP DQGFKRTFKA QAVD

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY313902	1e-76	AY313902.1 Zea mays yabby15 protein mRNA, partial cds.
GenBank	BT036123	1e-76	BT036123.1 Zea mays full-length cDNA clone ZM_BFb0097A05 mRNA, complete cds.
GenBank	BT040048	1e-76	BT040048.1 Zea mays full-length cDNA clone ZM_BFc0062B12 mRNA, complete cds.
GenBank	BT086367	1e-76	BT086367.1 Zea mays full-length cDNA clone ZM_BFc0157F19 mRNA, complete cds.
GenBank	EU960717	1e-76	EU960717.1 Zea mays clone 227877 yabby15 protein mRNA, complete cds.
GenBank	KJ726850	1e-76	KJ726850.1 Zea mays clone pUT3390 C2C2-YABBY transcription factor (YAB8) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155221.1	5e-62	protein YABBY 4-like isoform X2
Swissprot	A2X7Q3	2e-50	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	2e-50	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	M8ALH9	2e-62	M8ALH9_TRIUA; Protein YABBY 4
STRING	MLOC_60897.1	2e-61	(Hordeum vulgare)
STRING	TRIUR3_29073-P1	4e-63	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-39	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]