PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29141-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 256aa    MW: 27918.6 Da    PI: 6.512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29141-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12100146354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h ++Er RRd++N +f  Lr  +P+       +++Ka+ L  Av YI +L
  TRIUR3_29141-P1 100 VSHVQAERLRRDKLNRRFCDLRAAVPNV-----SRMDKASLLADAVAYIAEL 146
                      5899***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1589157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.85697146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-9100151No hitNo description
PfamPF000101.4E-9100146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-15101160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-10103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDDLLSPCSS FLPPSPSSHF STVGQQVLEF VSREVPEQWL FDDGTMCQNA DRELSPTGRT  60
LLRSAELSEL PPSLPATLQC QTKRRGRKPG PRSDGRHSAV SHVQAERLRR DKLNRRFCDL  120
RAAVPNVSRM DKASLLADAV AYIAELRSRV ARLEDEANKE LEQSSVAASK FLQVDEAVDV  180
RMVGSDAAAV HVTTAASHAP ARLMGALRSL ELQVQHACVS RVQGVTLQDV VVDVPPSMQD  240
ADGLRSALLQ TLQDSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-2195156263Transcription factor MYC2
5gnj_B4e-2195156263Transcription factor MYC2
5gnj_E4e-2195156263Transcription factor MYC2
5gnj_F4e-2195156263Transcription factor MYC2
5gnj_G4e-2195156263Transcription factor MYC2
5gnj_I4e-2195156263Transcription factor MYC2
5gnj_M4e-2195156263Transcription factor MYC2
5gnj_N4e-2195156263Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195652.11e-127transcription factor MYC2-like
TrEMBLM7ZQR50.0M7ZQR5_TRIUA; Transcription factor MYC2
STRINGTRIUR3_29141-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.15e-32bHLH family protein