PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29223-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19782.3 Da    PI: 12.1187
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29223-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.76.3e-082349228
                     ---SHHHHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELS 28
                     rie k  rqv f+kRr+ ++ KA+EL 
  TRIUR3_29223-P1 23 RIEKKGARQVCFAKRRQVLFNKANELA 49
                     89***********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.5821449IPR002100Transcription factor, MADS-box
SMARTSM004320.00361464IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-91549IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-61636IPR002100Transcription factor, MADS-box
PfamPF003191.0E-82349IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-63651IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVRRAAAPKR RAGNGRTKIA IRRIEKKGAR QVCFAKRRQV LFNKANELAF GGSSSGNAGM  60
GMQQMQMAVP STQGFADGMH MHQMLMAMPP PPGLAYGVDM QQMHMSIPPS PVFGAGTEMQ  120
QMVMAMQPQP DFAAETEMQQ AAMAMPPRSF LLGWRCLRRR WSFLLGWRCL RRQGSPPG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-104HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192347.16e-47MADS-box transcription factor 27-like
TrEMBLM7ZCU61e-125M7ZCU6_TRIUA; Uncharacterized protein
STRINGTRIUR3_29223-P11e-126(Triticum urartu)