PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29383-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 220aa    MW: 24127.4 Da    PI: 8.8922
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29383-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB87.61.4e-271511767
            NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddl 67
                     mk+vlP nak+sk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd 
  TRIUR3_29383-P1  1 MKQVLPPNAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDG 51
                     9************************************************94 PP
2NF-YB31.25.2e-1094124434
            NF-YB   4 qdrflPianvsrimkkvlPanakiskdaket 34 
                      +++ lPianv+rimk vlP +ak+sk+ake 
  TRIUR3_29383-P1  94 KEAPLPIANVGRIMKDVLPPEAKVSKHAKED 124
                      6788*************************96 PP
3NF-YB94.59.6e-301251852080
            NF-YB  20 vlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80 
                      vlP +ak+sk+ake++qec++efi+fvt+eas++c+re+rkt+ngdd+++a++tlG+++y+
  TRIUR3_29383-P1 125 VLPPEAKVSKHAKEVIQECATEFIGFVTGEASERCRRERRKTVNGDDICHAMTTLGLDNYA 185
                      89**********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.24E-17150IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.1E-24150IPR009072Histone-fold
PfamPF008089.5E-18150IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-91937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
Gene3DG3DSA:1.10.20.106.7E-794123IPR009072Histone-fold
SuperFamilySSF471132.33E-2496187IPR009072Histone-fold
PfamPF008088.8E-598123IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-25125185IPR009072Histone-fold
PfamPF008081.6E-15127176IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-9159177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKQVLPPNAK VSKEAKETMQ ECVSEFISFV TGEASDKCHK EKRKTVNGDD GSCWRYSKGI  60
SSRVPRKAFP GFLCRFFRGD GAAKPPPPSD PRGKEAPLPI ANVGRIMKDV LPPEAKVSKH  120
AKEDVLPPEA KVSKHAKEVI QECATEFIGF VTGEASERCR RERRKTVNGD DICHAMTTLG  180
LDNYAGSRSP APPPPGDGMI QIDVWGELSN SRGNEKHGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-261185880Transcription factor HapC (Eurofung)
4g92_B1e-261185880Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787431e-102KM078743.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196190.17e-67transcriptional activator hap3-like
SwissprotO040271e-29NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLM8ASW71e-161M8ASW7_TRIUA; Nuclear transcription factor Y subunit B-4
STRINGTRIUR3_29383-P11e-162(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.17e-32nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]