PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29570-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 511aa    MW: 56577.3 Da    PI: 9.7863
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29570-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix323.3e-10107144439
         trihelix   4 kqevlaLiearremeerlrrgklkkplWeevskkm..r 39 
                      +qe+laLi++r+em++++r++ lk+plWeevs+    r
  TRIUR3_29570-P1 107 DQETLALIRIRSEMDTTFRDATLKGPLWEEVSRPWskR 144
                      79******************************977433 PP
2trihelix110.41.1e-34215300187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r +m++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+qlea
  TRIUR3_29570-P1 215 RWPKTEVHALIQLRMDMDNRYQENGPKGPLWEEISAGMRRLGYSRNSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLEA 300
                      8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.63E-29214279No hitNo description
PfamPF138372.2E-22214301No hitNo description
PROSITE profilePS500907.062214272IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.7E-4214271IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGIINHYHLE LRWIRLYNHG DAKCRRSIVR HLDAREIRFR TKRTQMLPSF CNFALAMING  60
AEAEVGGLTG RRRRSQDRVN PVRGEGDETG KPDRTAVMAG IGRLRVDQET LALIRIRSEM  120
DTTFRDATLK GPLWEEVSRP WSKRRSGRRR VAQPPSQPPQ HKETTREEAG TPRSAPAPTS  180
AGLSLALVPV ATEQHVVEAA GLGGGESVGG PSSSRWPKTE VHALIQLRMD MDNRYQENGP  240
KGPLWEEISA GMRRLGYSRN SKRCKEKWEN INKYFKKVKE SNKRRPEDSK TCPYFHQLEA  300
IYRKKHNGGG SSGAAANNAV VPVPAVAEHQ NLNRHEIEIE GKKINDTDKR NNGGVGAAQP  360
EDAVRELNEQ PHREFTTDET DSDDMGDDYT DDGEDGEDDG KMQYRIQFQR PNPVGTNNAP  420
PPPTTAATAA PTSTPASSFL AMGWPGGSTA SHKRREQAVP PAMEIMRVPF KLKGSSGYLV  480
GSSLAYLWSS QSLYHCRAAH GGAHLQVGAA S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589110.0AK358911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085J16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200393.11e-145trihelix transcription factor GTL1-like isoform X1
TrEMBLM8A4I80.0M8A4I8_TRIUA; Uncharacterized protein
STRINGTRIUR3_29570-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-50Trihelix family protein