PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29627-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 508aa    MW: 57647.7 Da    PI: 8.7293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29627-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.1e-12231031399
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       + +v+p  f+++ ggk    +t++l+ ++g  ++v l  + + +r++l+ GW  F +an+++e+ +++F++ g+s f   v++f++
  TRIUR3_29627-P1  23 MHSMVIPEWFVSQLGGKI--WRTIKLQAPDGIIYDVGL--SENMNRIILKFGWAAFLDANEIEENYSLMFRYLGNSLF--EVTIFDS 103
                      4669*******9999995..559***************..**********************************9999..8999886 PP
2B332.21.9e-10214309495
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS...SE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgr...se 89 
                      ++++s+v +sg lv+ k++a++h+    e++ ++l+  ++ + W+ ++ +  +  + +          +Fv++n+++eg++++F+ + +   ++
  TRIUR3_29627-P1 214 EMKKSNVKQSGTLVICKDYARKHMPC--EGTNIILQLpRKDKGWKCRFHIrpS--GTSdaGRRNLSLGNFVRDNHVREGEICLFEPMTNakeKR 303
                      6889*******************733..556788888466799***9977453..4332233334467*****************553331355 PP

                      E..EEE CS
               B3  90 felvvk 95 
                      f+++v+
  TRIUR3_29627-P1 304 FTMTVH 309
                      666665 PP
3B343.84.4e-14411505899
                      -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
               B3   8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt..kGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                       + +  +r  + k+ a +h gk  + + l+l    ++ sW  k++++ +  ++ ++  kGW  F+++n+L+egD ++Fkl+++ +  ++v++++
  TRIUR3_29627-P1 411 VYRGGGCRYLVQKSAAGHHRGK-SSLISLMLHReGRSGSWPTKMQHSMQHTTHAMRvlKGWTFFARDNRLREGDLCLFKLIKNkEPLTMVIHII 503
                      4445558888888888777655.466778887735559******775555555555669**********************999*********9 PP

                      -S CS
               B3  98 rk 99 
                      r+
  TRIUR3_29627-P1 504 RR 505
                      98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.98311104IPR003340B3 DNA binding domain
SuperFamilySSF1019367.06E-1613104IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-714104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-1518105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.43E-1219102No hitNo description
PfamPF023625.8E-1023103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-12203300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-13206312IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0039211314IPR003340B3 DNA binding domain
CDDcd100172.38E-11211310No hitNo description
PROSITE profilePS508637.528211314IPR003340B3 DNA binding domain
PfamPF023621.3E-8213310IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-14394506IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-13395508IPR015300DNA-binding pseudobarrel domain
CDDcd100171.88E-10400504No hitNo description
SMARTSM010190.0033402506IPR003340B3 DNA binding domain
PfamPF023621.9E-11411505IPR003340B3 DNA binding domain
PROSITE profilePS5086310.574438506IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSNPCECCER KIRFIRKING NFMHSMVIPE WFVSQLGGKI WRTIKLQAPD GIIYDVGLSE  60
NMNRIILKFG WAAFLDANEI EENYSLMFRY LGNSLFEVTI FDSNGKEKVS RSHYTDNSSS  120
SHPGATQSSA GQGSDSDGSQ KESLYQYKKS AKMPAIYSSS EEFSEDNFVE SEDQQMLSKY  180
CVFSGRCYLT EAQKAKVLAL VKKIRPEILV LVVEMKKSNV KQSGTLVICK DYARKHMPCE  240
GTNIILQLPR KDKGWKCRFH IRPSGTSDAG RRNLSLGNFV RDNHVREGEI CLFEPMTNAK  300
EKRFTMTVHL VHKAGIYHSP GERTDIGSNH GRTSTKMASA MDEPPTDGEE YSSEHEEHGV  360
SDHSEGGSEP PFMLADKAYL TRAQEKKVLE KVEEIESEVP LYAAIMSKSN VYRGGGCRYL  420
VQKSAAGHHR GKSSLISLML HREGRSGSWP TKMQHSMQHT THAMRVLKGW TFFARDNRLR  480
EGDLCLFKLI KNKEPLTMVI HIIRREEC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE9965231e-160HE996523.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58237.
GenBankHG6703061e-160HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198703.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLT1NG860.0T1NG86_TRIUA; Uncharacterized protein
STRINGTRIUR3_29627-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-21B3 family protein