PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_29632-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 226aa MW: 23563.3 Da PI: 6.8807

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_29632-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.1	7.9e-05	89	124	2	37
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkkl 37 rk+ +++k+q +Lee+F+ +++++ + e + +++ TRIUR3_29632-P1 89 RKKLRLSKDQAAVLEECFKTHHTLTPVDCEYMKRWC 124 788899*******************99888777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-5	73	120	IPR009057	Homeodomain-like
SMART	SM00340	9.6E-16	113	154	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.2E-7	115	145	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MAPQSLDLGL SLGLGLVSQP SQPSFWYSGG NVAADQEVGP TPTAAAVEER RCSPGSPASS 60 GSGSGLKRGA ERSAGSGDED QDDDGGNARK KLRLSKDQAA VLEECFKTHH TLTPVDCEYM 120 KRWCEQLAEQ NRRLEKEVAE LRALKAAPPA HNGASAGPLT TLTMCLSCKR VASTSSASAC 180 TVPSFSSNAG TGMPMPSPVA LPEHRQFFCG FRDTGATYGS SAGLAK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366997	1e-140	AK366997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049L03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020170044.1	1e-109	homeobox-leucine zipper protein HOX28-like
Swissprot	A2Y931	1e-34	HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
Swissprot	Q5VPE5	1e-34	HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBL	T1NG90	1e-164	T1NG90_TRIUA; Uncharacterized protein
STRING	TRIUR3_29632-P1	1e-165	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	2e-24	homeobox-leucine zipper protein 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]