PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29692-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 176aa    MW: 19060.2 Da    PI: 6.6142
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29692-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015111133123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C ++Fs+   L  H r H
  TRIUR3_29692-P1 111 HECPFCFRVFSSGQALGGHKRAH 133
                      79************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.2E-96489IPR007087Zinc finger, C2H2
PfamPF139121.9E-10110135IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSLVMLSRDS WTRSRSEPEP RWASEAEQNN DGTKVFDEDE DGPDVAGEAY YAEATPVHVH  60
PRARHQCGAC KKVFRSYQAL GGHRASVKKG KGGCVPPPAG KACRADAPIV HECPFCFRVF  120
SSGQALGGHK RAHMPSPSPA KCGDSFGSFD LNVPAAFDDD FELSAVYDAE FGSVRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3689221e-165AK368922.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2082F22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195773.11e-116zinc finger protein ZAT9-like
TrEMBLA0A3B5Y0141e-125A0A3B5Y014_WHEAT; Uncharacterized protein
TrEMBLA0A446IZA01e-125A0A446IZA0_TRITD; Uncharacterized protein
TrEMBLM7YTG21e-127M7YTG2_TRIUA; Uncharacterized protein
STRINGTRIUR3_29692-P11e-128(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11214410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.19e-24C2H2-like zinc finger protein