PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_29815-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 296aa MW: 31707.2 Da PI: 3.7875

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_29815-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	77.4	2e-24	36	122	3	86
NF-YC 3 ksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 +fw ++ +e + df+++ lP++r+k++++a+ed mi+a++P+ l+k celf+ el+lr+w a++ +rr + sdia+a++ t TRIUR3_29815-P1 36 DQFWRERqeeMEATVDFNDRILPMSRLKRLIRAEEDGMMIAADTPAYLAKLCELFVQELALRAWACAQSHHRRIILESDIAEAIAFT 122 679987656799***********************************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.51E-17	45	120	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.1E-20	50	119	IPR009072	Histone-fold
Pfam	PF00808	9.0E-12	57	119	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGTEQAKEGR GAGEERVVVR TGPRPALPAP QQRAVDQFWR ERQEEMEATV DFNDRILPMS 60 RLKRLIRAEE DGMMIAADTP AYLAKLCELF VQELALRAWA CAQSHHRRII LESDIAEAIA 120 FTESGTSFAG ENCAAETMAS PPPAGPAGAV ALPSVHPAAY YLCAYPVNND VEAFAVGNTD 180 PDVIPPEIVV GDVAIPPEII EGNVADGNGD GGQQQQQSEN LGGNGENVVV PQSNDVQEDG 240 ADGMFLEEIL MDEDLMFPDA ELFPLVGAAP DPEDFIVDQD VLDDVFANPS SSASSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	2e-17	44	123	5	84	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU902794	0.0	GU902794.1 Triticum monococcum nuclear transcription factor Y subunit C10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153110.1	5e-98	uncharacterized protein LOC109738417
Refseq	XP_020159981.1	5e-98	uncharacterized protein LOC109745254
TrEMBL	M7Y6A4	0.0	M7Y6A4_TRIUA; Nuclear transcription factor Y subunit C-2
STRING	TRIUR3_29815-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13968	15	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	7e-22	nuclear factor Y, subunit C2