PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_29870-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 279aa    MW: 30219.5 Da    PI: 6.4257
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_29870-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.91.9e-321670155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl
  TRIUR3_29870-P1 16 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 70
                     58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8141373IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-311571IPR009057Homeodomain-like
SuperFamilySSF466891.97E-171570IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-251771IPR006447Myb domain, plants
PfamPF002493.8E-91869IPR001005SANT/Myb domain
PfamPF143798.6E-24102148IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGSNDGPNSK ASLAARQRLR WTDELHEQFV EAVTQLGGPD RATPKGVLRI MGTPGLTIYH  60
VKSHLQKYRL AKYIPDSSAD GNKADNKDPG DSLAGLDGSS GMQISEALKL QMEVQKRLHE  120
QLEVQRQLQL RIEAQGKYLK KIIEEQQRFG GGGIKSETPG AGATVTASSD QFPDSERTDP  180
STPAPTSESA SQGAAFKRDS GSQTEAIKSP CHDEPLLTAD SNCHPGSPTL SPKHERAAKR  240
QRGSEAEFPE AELSLPQHIF ESSSGPEFQQ CAVPYYSGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-231673158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657330.0AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13.
GenBankAK3738550.0AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14.
GenBankAK3752400.0AK375240.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3089A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180683.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180688.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180697.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180704.10.0myb family transcription factor PHL7-like isoform X1
RefseqXP_020180710.10.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW09e-92PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A3B6KHE50.0A0A3B6KHE5_WHEAT; Uncharacterized protein
TrEMBLA0A446T1N10.0A0A446T1N1_TRITD; Uncharacterized protein
STRINGTRIUR3_29870-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-62G2-like family protein