PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30232-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 414aa    MW: 46617.4 Da    PI: 5.5674
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30232-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind941.6e-291849101
                      HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                      ++++++++ ++ w+ +g+sfvvl + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF++++F +++++ l++i+r+k
  TRIUR3_30232-P1   1 MVDEPATDAVVAWTPSGTSFVVLSQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFIRDQRHRLKNIHRRK 84 
                      8999*****************************************************9998.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004473.6E-26183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.8E-32183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-28183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-46183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MVDEPATDAV VAWTPSGTSF VVLSQADFCR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPE  60
QWEFANEEFI RDQRHRLKNI HRRKPIFSHS SHTQGAGPLA DSERRDYEEE IERLKCDNAS  120
LKLQLERKKT DMESKMKALE DKLFAIEGQQ KNLISYVREI VNAPGFISSL VEQSDYHGKK  180
RRLPKPISFH EDASTQGNQI MHCDMVNSPT HELFRASFDK MESSLNSLEN FFKEASEAFG  240
NDVSYDGDVP GHSSAVVLTE LHSSGESEPH AQSPPSMMHT CSAGVGDSHS SRDIAESASC  300
PESSPLPEAH SRADSRSKVS EIDVNLEPAV TETGPSRDQQ PTQDPPADAN DGFWQQFLTE  360
QPGLSHAHQE AQSERRDREA NQTTAGDRGS FWWGKRGISP QLRKPEYVFL ISCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2218336129Heat shock factor protein 1
5d5v_B2e-2218336129Heat shock factor protein 1
5d5v_D2e-2218336129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7907910.0FJ790791.2 Triticum aestivum cultivar Atlas66 HsfA4a mRNA, complete cds.
GenBankJQ8014510.0JQ801451.1 Triticum aestivum heat shock responsive transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165982.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLM8AKM30.0M8AKM3_TRIUA; Heat stress transcription factor A-4b
STRINGTRIUR3_30232-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-67HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]