PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30399-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 640aa    MW: 75033.9 Da    PI: 10.2766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30399-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08618639526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       Cr+++++  C+y ++CkF+Hg
  TRIUR3_30399-P1 618 MCRYYQQGLRCPYEGNCKFSHG 639
                      7******88************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.301.6E-93275IPR003034SAP domain
SuperFamilySSF689062.38E-73375No hitNo description
PROSITE profilePS508008.5484074IPR003034SAP domain
SuperFamilySSF902292.62E-5612639IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544613640IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041615640IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6616639IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4619639IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MARLSISARK GRKGPVALEM GNEDIDLLAM VDKLMHDGQL EKLKVYECKA YLRIHKLRLG  60
GKKEELLNRI RDHIEVKLFG DVKYPVSSFV LNCKGDACKG DVVMFEQNIY RRKKGDPRGI  120
KGRLCGQRTN AGRIIKESYG TAKQQHTFTV EIFWSKGYKP WPPLHPLLIK GRNLYKDKTM  180
RQPWPDEKER SRVLEEKHAR GFQARKSREV RIHEKEIDKM RRFNRFDKGR TDSLPQGEPG  240
NARQQQISSK QNPAIHLFHQ QFLYQGPSVQ HGKPEKTRQQ QILSRPTTSE QIFKHPMQHD  300
NHRPTPAQQM FKNPQEHNNH QQQQNKVLPQ EGTTKTVSIL GRAPCLHYGG SGNAVQQQKV  360
SKPAPMEQIR NQSQPLKHEH HNLVLPQEDA KKGTNRVHSI DHGKAPCLQY AGPGNAMQQQ  420
SSRPALPQQI KNPPQPPKHQ HTEVLRQEDG NRTYRVEPVD HWNNNYHNTT YDESAFQRRG  480
TQDAKTHQHG SSGQPHAHGD SQWHQPLRPR IQDFSSRNQE GDYRDHRQTT REQYNPQERH  540
HHNQHGRGQM IQEQYQPQKI HHQNEHDSWR MNQNQYHPQE NHHQNGHDSW RMNHNQYHPQ  600
ENHHQNYRYT QQFPAPKMCR YYQQGLRCPY EGNCKFSHGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749660.0AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151518.10.0zinc finger CCCH domain-containing protein 62-like isoform X2
SwissprotQ338N21e-162C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLM7ZWQ70.0M7ZWQ7_TRIUA; Zinc finger CCCH domain-containing protein 62
STRINGTRIUR3_30399-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]