PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30537-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 215aa    MW: 24231.2 Da    PI: 7.7255
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30537-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.3e-053049120
                     EEETTTTEEESSHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                     ++C  C+ksF+r  n++ H+
  TRIUR3_30537-P1 30 FSCAVCNKSFNRFNNMQMHM 49
                     89*****************9 PP
2zf-C2H214.69.7e-05121143123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y C  Cgk+F  + + ++H +++
  TRIUR3_30537-P1 121 YACRRCGKRFAVRGDWRTHEKNC 143
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-52551No hitNo description
PROSITE profilePS5015710.1383057IPR007087Zinc finger, C2H2
SMARTSM003550.723052IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-53049IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.00323049No hitNo description
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
SMARTSM0035522084116IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.8E-7107141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.3E-7107141No hitNo description
SMARTSM0035558121141IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704121141IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MAHPNSDIVT VPSQYWIPSA AEILVGSTQF SCAVCNKSFN RFNNMQMHMW GHGSQYRKGS  60
ESLRGAVTVG PAAPPPSLMR LPCYCCAEGC RNNIDHPRAR PLKDFRTLQT HYRRKHGARP  120
YACRRCGKRF AVRGDWRTHE KNCGKLWFCV CGSDFKHKRS LKDHVRSFGG GHAPHIIESV  180
TVDEDEDEDD EHDDGDLHLY DENGNAGDGS DMVLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732990.0AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172443.11e-151zinc finger protein WIP6-like
SwissprotQ9FX684e-96ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLM8A7031e-161M8A703_TRIUA; Protein TRANSPARENT TESTA 1
STRINGTRIUR3_30537-P11e-162(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-98C2H2-like zinc finger protein