PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_30592-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 246aa MW: 27509.5 Da PI: 8.8372

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_30592-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	62.8	7.4e-20	99	142	49	92
NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 asdkc +ekrktingddl+w+++tlGfedyveplk++lk y++ TRIUR3_30592-P1 99 RASDKCVKEKRKTINGDDLIWSMGTLGFEDYVEPLKLHLKLYQQ 142 69***************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.05E-12	99	147	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.8E-15	99	143	IPR009072	Histone-fold
PRINTS	PR00615	1.5E-7	104	122	No hit	No description
PRINTS	PR00615	1.5E-7	123	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MARSNTSGAP WGDTADFFSS PRRVLFLRVV AAGAGCALLA PAEDDEGEDA EAGEGGGGGG 60 LRLVAIRWAR VTCALKNKRG DMVSRSGTST LVCDPGRRRA SDKCVKEKRK TINGDDLIWS 120 MGTLGFEDYV EPLKLHLKLY QQAFEFKRLL LYYDNAVLFR LAMEQKERHC YFNKREDAFV 180 HPVRTYPEMC LANLQVTPTL KDQIREAQLL DTMVKKVKHD IRAYPNTSAN ALMTKTFYSS 240 RPDCGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM078742	1e-51	KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M8A4C7	0.0	M8A4C7_TRIUA; Nuclear transcription factor Y subunit B-4
STRING	TRIUR3_30592-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25630	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.8	8e-20	nuclear factor Y, subunit B1