PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30689-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 352aa    MW: 38533.9 Da    PI: 4.4897
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30689-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.82.4e-121391149
                     HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +tf kRr g++K A  +S L+ a+vav++  ++gk++ +
  TRIUR3_30689-P1  1 ITFYKRRSGLFKRATDISALTRARVAVVLETNNGKMHSF 39
                     69***********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-11152IPR002100Transcription factor, MADS-box
PfamPF003192.3E-12139IPR002100Transcription factor, MADS-box
SMARTSM004320.0082142IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.334143IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-6520IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-62041IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
ITFYKRRSGL FKRATDISAL TRARVAVVLE TNNGKMHSFG TPLADPIVDS FLFGAPPAVP  60
CTNEATTARI GSLQNEVAQL DMENMTEEDR NKLILHMKSI QEENPSMVAN LIFTNEQDLG  120
LEDLNKLFSE LSRVQKDIRC RLPPLHGREA KTSGTCVAQD LQVPSVLPTA HLGTTHSLMQ  180
PSWPHNLSQL QPPADPLPSQ PEQTSAPLFP MQVPQMFDFA PPSLAPHLAS HVQPIPNQVH  240
EQTQPEELHV QNYESPCNIV QPQQSDANHD STSGQNLEAS PLLGYSSGNA FSIDDPFNTE  300
QWGHALSDQA FYNSFLGMDD YLGSSGTDLG QSSMVNGGWV DVPPSSTGQD ID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174736.10.0MADS-box transcription factor 8-like
TrEMBLT1NJ510.0T1NJ51_TRIUA; Uncharacterized protein
STRINGTRIUR3_30689-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-10AGAMOUS-like 28