PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30765-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 204aa    MW: 22169.7 Da    PI: 4.7343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30765-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-05176198123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C++C+ +F+++  +  H+++H
  TRIUR3_30765-P1 176 YTCKICNATFNTSQAYGGHMSSH 198
                      9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.6E-4171200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.15E-5172202No hitNo description
PfamPF139121.7E-7176200IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
PNISPLHEAL RGTTAMPVLN DFVDLESPSS YSPSIGNSST NMYAPQEGTV MPVNDSSMIP  60
YQSSAELAPL PPQLGDTIPI PLSSDEKGMF SHEGFLTNPF WNEFNSSHQM QNLSTEASPF  120
TPLLQTEPNS IVHSQLYTNG VLDDGSLFKM ATRDVSEVSS LPSSAIMQDS TTPRKYTCKI  180
CNATFNTSQA YGGHMSSHSK ARMK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLT1NJC41e-148T1NJC4_TRIUA; Uncharacterized protein
STRINGTRIUR3_30765-P11e-149(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11492612