PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30780-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 615aa    MW: 67492 Da    PI: 8.615
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30780-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.81.4e-213388156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  TRIUR3_30780-P1 33 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 88
                     688999***********************************************999 PP
2START791.2e-2518628746137
                      EEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEE CS
            START  46 ealrasgvvdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdv 128
                       a r++g+ + ++++lv++l++ + +W+e+++    +a+t+e issg      g +qlm aelq+lsplvp R+++f+R+++q+ +g w+ivdv
  TRIUR3_30780-P1 186 PATREVGIAIINSVDLVNSLMNEA-RWSEMFPcvvaRASTMEIISSGmggtrsGSIQLMRAELQVLSPLVPiREVTFLRFCKQHADGLWAIVDV 278
                      6899********************.********************************************************************* PP

                      EEE-TTS-- CS
            START 129 Svdseqkpp 137
                      Svd    p 
  TRIUR3_30780-P1 279 SVDGVLRPD 287
                      **9876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-221690IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-232090IPR009057Homeodomain-like
PROSITE profilePS5007118.3013090IPR001356Homeobox domain
SMARTSM003891.5E-193194IPR001356Homeobox domain
PfamPF000464.1E-193388IPR001356Homeobox domain
CDDcd000861.30E-193390No hitNo description
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
SMARTSM002340.0024142349IPR002913START domain
SuperFamilySSF559617.14E-11183286No hitNo description
PfamPF018526.3E-20186285IPR002913START domain
PROSITE profilePS5084815.341187307IPR002913START domain
SuperFamilySSF559611.0E-11438609No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
REDENDSRSG SDNLDGASAD ELDPDNSNPR KKKKRYHRHT PQQIQELEAV FKECPHPDEK  60
QRMELSRRLN LESRQVKFWF QNRRTQMKTQ IERHENALLR QENDKLRTEN MTIREAMRSP  120
TCGNCGGAAV LGEVSLEEQH LRIENSRLKD ELDRVCALAG KFLGRPVSAI SSPLSLPYSL  180
CSCPRPATRE VGIAIINSVD LVNSLMNEAR WSEMFPCVVA RASTMEIISS GMGGTRSGSI  240
QLMRAELQVL SPLVPIREVT FLRFCKQHAD GLWAIVDVSV DGVLRPDSGT GAGPAGYMGC  300
RLLPPGWHGF AFAVVNWASS ESPVPPLCSG DIMGDQIRSM QLQAGCCRSW PCLRRAACPL  360
ASASERRHLL HARRIYYYFA TVRDQLAARP APRVRRQPPL LPCRGKWPKP AGKAKLHSVR  420
GCPWMMARQS VGAPGEPPGV VLSATTSVRL PGTPPQRVFD YLRDEQRRGE WDILANGEAM  480
QEMDHIAKGQ HHGNAVSLLR PNATSGNQNN MLILQETCTD ASGSLVVYAP VDVQSMHVVM  540
GGGDSAYVSL LPSGFASPTA HGGSSNNSPG SLVTVAFQIL VNNLPTAKLT VESVDTVSNL  600
LSCTIQKIKS ALQAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934RKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657940.0AK365794.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163116.10.0homeobox-leucine zipper protein ROC6-like isoform X2
TrEMBLT1NJD80.0T1NJD8_TRIUA; Uncharacterized protein
STRINGTRIUR3_30780-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.11e-141homeodomain GLABROUS 7