PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30893-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 371aa    MW: 40249.2 Da    PI: 5.4897
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30893-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.65.8e-121359349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i+++  r  tfskRr g++K A  LS  + a+va+++  ++ k++ +
  TRIUR3_30893-P1 13 INDDKERDFTFSKRRGGLFKVAADLSAVTSARVAIVVEKENEKMHSF 59
                     88999****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.315363IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-8362IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-6525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-15773IPR002100Transcription factor, MADS-box
PfamPF003191.9E-151359IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-62540IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-64061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPKKDRRSAI TYINDDKERD FTFSKRRGGL FKVAADLSAV TSARVAIVVE KENEKMHSFG  60
TPSADPIVDA FLAGAPLAIP LADEATTTRI AQLQSEVARL DMHCMTEFKE NQLSIKHMKQ  120
ILEQHPGTVA NLIFSKEEEL GLEDLKNLSN EIYRVHEEIG HRLPPLHYGH KAMTSGASMI  180
QNMLPSSGPP SNHMKIVPSS VHSPWAHHLP QHQMPSSPLP PPPPGQIVAP QFPQVPSMFH  240
PAPSSSVPQI ASQLQTTSNQ ALELPPPLDI SVNDYVSSSD PVSPQQNNAN PNSTTGYNLV  300
ASPLLVNSGG NDLTINDPFG YESWGYGLSD QPFYNGFLEM GAYMGYNGVD VGQSSVGNGG  360
WVDAPPEPSS S
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185126.11e-164pheromone receptor transcription factor-like
TrEMBLM7ZVG60.0M7ZVG6_TRIUA; Agamous-like MADS-box protein AGL62
STRINGTRIUR3_30893-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-12AGAMOUS-like 62