PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_30996-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 645aa    MW: 70762.6 Da    PI: 6.6418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_30996-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.6e-1796185199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffkv+    +++++ l +p +fa++++g    ++ + led  g +W+v++  + ++gr  ++ GW++Fv ++ + +g+f+vF+++ rs f  vv
  TRIUR3_30996-P1  96 FFKVM--TGSFSEK-LDVPPPFAKNISGL--ADTNVYLEDAFGLRWRVYV--SSRDGRLSFGHGWSNFVLDHAVAVGEFLVFRHITRSVF--VV 180
                      78888..3344443.77******999555..3557***************..9999*****************************99999..** PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      ++f k
  TRIUR3_30996-P1 181 QIFAK 185
                      *9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2192188IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.40793186IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-2393188IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-1995183No hitNo description
SMARTSM010194.2E-1796186IPR003340B3 DNA binding domain
PfamPF023623.2E-1496185IPR003340B3 DNA binding domain
CDDcd100173.30E-7566645No hitNo description
SuperFamilySSF1019361.96E-7569637IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-5577637IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.896582645IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
AEMMEVIKKE QEEDGTAQSL SLEEGGAKKV VGGGHEEEPS PSGKAKKKTR KQGVSDPQRK  60
RACVDCTRRC ARVHGRATAS SSGQAPPAPV ATPPSFFKVM TGSFSEKLDV PPPFAKNISG  120
LADTNVYLED AFGLRWRVYV SSRDGRLSFG HGWSNFVLDH AVAVGEFLVF RHITRSVFVV  180
QIFAKSACER LHLCEKNKRQ SKKRKKPQEK ASSDGDRTAK ASKKSSKDKD RKSSKKKQRA  240
CDLLDGDQDR AHGDQGQDQD HMVLISTANT QAENCGGSDF GTYAEPTTPL AMMDLDDEIT  300
DDIFLTADAY EFETDLCIPE EPGVFPVDNG IGMEAPVTRG QTSGFSCAEM IGSRNCDSSV  360
VWHGEKSACL KNVQMADARS TDTNAPVLDM DMATLPSYAL SQITEHKPFP RIDAADPPSE  420
CATGNCKKDT DYKFMDMFLI DHAYSAIVLV EDSSAEQDED LRMQDGAGRA AAEIISGGSK  480
PGERGERRRK RRVQPADGFL TSGKEDAGDH ESASPNPSSR KLCVAAPPAD QTWLVSRSYS  540
DLVLRSKDII TSVVRSELVF MQEFPCRMPV LPGRKKQGRK VVVLEDPGGR RWPVLRWPVL  600
YLCTPTFSGF VAGWADVRAE NGLREGDACE LELRRGSYSE LALRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201205KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147291.10.0B3 domain-containing protein Os01g0905400-like
TrEMBLT1NJZ50.0T1NJZ5_TRIUA; Uncharacterized protein
STRINGTRIUR3_30996-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-09B3 family protein