PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31002-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 184aa    MW: 20654.2 Da    PI: 8.2751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31002-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-1261114155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      r+++h++ Er  R+++N+ +++Lr+llP  +   + +Kl+  +i+ ++++YI +Lq
  TRIUR3_31002-P1  61 RKMSHSAYERDSRKQLNEHYSNLRSLLPDdD--HHTRKLNNPTIVSRVIKYIPELQ 114
                      799**************************66..56666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-859117No hitNo description
SuperFamilySSF474596.94E-1459130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.38360113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1260129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-1061114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-666119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEHQMFNDPF TSSMSSLEAE IFSGGHHHPA PSPQWPGLDH DIPAAPAANN ATSSGGPGSH  60
RKMSHSAYER DSRKQLNEHY SNLRSLLPDD DHHTRKLNNP TIVSRVIKYI PELQKEVDGL  120
EKKKEQLTRA SCRPGDDTAP IVSPTCLNDR EIMVQFYKKA VRKEATNNDV QMARMEAAMK  180
ARVK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-110HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193391.11e-97transcription factor bHLH100-like
SwissprotA2WZ604e-46IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLM8A4X51e-136M8A4X5_TRIUA; Transcription factor ORG2
STRINGTRIUR3_31002-P11e-137(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-16bHLH family protein