PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_31365-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 243aa    MW: 25412.4 Da    PI: 7.1251
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_31365-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.3e-081236226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k ++C +f+ t  C++Gd+C+F+H+
  TRIUR3_31365-P1 12 KSKPCIRFFSTAGCRFGDNCRFIHD 36
                     7789********************6 PP
2zf-CCCH19.81.4e-06209234127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC +far G C +Gd C+FaHg+
  TRIUR3_31365-P1 209 FKTKLCGHFAR-GCCTHGDGCRFAHGE 234
                      69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3711038IPR000571Zinc finger, CCCH-type
SMARTSM003560.0751037IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-61138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-71236IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-71236IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.26E-13103179IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.2E-14108175IPR004088K Homology domain, type 1
SMARTSM003225.1E-13108178IPR004087K Homology domain
PROSITE profilePS5008414.634109173IPR004088K Homology domain, type 1
PfamPF000131.1E-12111174IPR004088K Homology domain, type 1
CDDcd001058.93E-14111172No hitNo description
SMARTSM003561.3E-4208234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338208235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-8208239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-12209240IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4209234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
EPESFEAGVG SKSKPCIRFF STAGCRFGDN CRFIHDIPGG YLAVEKMGIL SGAAPAPPPA  60
QGEEKPGKHL STHNATPPPM EPTPTGDHAH QAQTAPDPRK EAVASFGASS TAKISVDASL  120
AGAIIGRGGA TIKLISRASG ARLRVRDHDW DADLKNVELE GTFDQIKNAY DMAMEQLIHV  180
VNHDGGGAPS PAAGANTTSH GGGWQLDSFK TKLCGHFARG CCTHGDGCRF AHGEGELRRP  240
VPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164519.11e-156zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-71C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLT1NKZ41e-178T1NKZ4_TRIUA; Uncharacterized protein
STRINGTRIUR3_31365-P11e-179(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2513945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-45C3H family protein