PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_31630-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SRS

Protein Properties

Length: 231aa MW: 23581.6 Da PI: 9.5277

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_31630-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	187.6	4.6e-58	7	155	14	154
DUF702 14 qakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletss... 104 +a++ +RCRtCCksrgfdC+thvkstWvpaa+rrerq+ +a s+ a+++++a sk++r l s++q+++s+t++s+a+++++ +t+s TRIUR3_31630-P1 7 RARRAAPPSRCRTCCKSRGFDCSTHVKSTWVPAARRRERQHLGGSA-SSPANASTAAGSKKPRLL-SSQQATTSHTSTSNATTPRSYDTTSshq 98 677888889***************************97776665.556667788999999986.8888999999*******9999999 PP DUF702 105 .......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 lP++v+++avfrcvrv+svddge+e+aYq++v+i+GhvfkG+LydqG+++ TRIUR3_31630-P1 99 dasfrgnLPRQVRAPAVFRCVRVTSVDDGEDEYAYQATVTINGHVFKGFLYDQGVDD 155 ******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.2E-52	6	154	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.7E-17	7	42	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.8E-29	106	153	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MESAATRARR AAPPSRCRTC CKSRGFDCST HVKSTWVPAA RRRERQHLGG SASSPANAST 60 AAGSKKPRLL SSQQATTSHT STSNATTPRS YDTTSSHQDA SFRGNLPRQV RAPAVFRCVR 120 VTSVDDGEDE YAYQATVTIN GHVFKGFLYD QGVDDGRASN DMDSSTGGAV PNMSELHLGG 180 GGGNAARGGG GSSSMAPSDM YGGGGAGGAG GGGGGQQHIL GGGSSYGNTM N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355643	0.0	AK355643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023M22.
GenBank	AK363554	0.0	AK363554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182901.1	1e-120	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	1e-55	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	M8AEV8	1e-166	M8AEV8_TRIUA; Uncharacterized protein
STRING	TRIUR3_31630-P1	1e-167	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	9e-42	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]