PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_31671-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 143aa MW: 15455.6 Da PI: 6.5314

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_31671-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	113.8	2.3e-35	2	143	235	374
GRAS 235 sPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 P vv+v+e+ea+ ++ ++ +r+ a+++y a+f++lea++p+ s+er vE+e+lgrei+ +v +g + + le+W + + GF TRIUR3_31671-P1 2 APAVVTVAEREASGGGIdpidELPRRVGVAMDHYLAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGGAGGR---WWRGLERWATAARGTGF 92 79*******99976556669******************************************999987...7899********* PP GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + pls +a++qa+lllr ++ s+gy v+e++g+ +lgW++rpL+svSaW+ TRIUR3_31671-P1 93 AARPLSAFAVSQARLLLRLHYpSEGYLVQESRGACFLGWQTRPLLSVSAWQ 143 ************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.165	1	122	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-33	2	143	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MAPAVVTVAE REASGGGIDP IDELPRRVGV AMDHYLAVFE ALEATVPPGS RERLAVEQEV 60 LGREIEAAVG GAGGRWWRGL ERWATAARGT GFAARPLSAF AVSQARLLLR LHYPSEGYLV 120 QESRGACFLG WQTRPLLSVS AWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-17	1	142	241	378	Protein SCARECROW
5b3h_A	8e-17	1	142	240	377	Protein SCARECROW
5b3h_D	8e-17	1	142	240	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269\|PubMed:12687001}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR758748	0.0	KR758748.1 Triticum aestivum MOC1 (MOC1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179440.1	2e-82	protein MONOCULM 1-like
Swissprot	Q84MM9	3e-71	MOC_ORYSJ; Protein MONOCULM 1
TrEMBL	A0A3B6RMQ7	7e-93	A0A3B6RMQ7_WHEAT; Uncharacterized protein
TrEMBL	A0A446XPB8	7e-93	A0A446XPB8_TRITD; Uncharacterized protein
TrEMBL	M7YDJ9	2e-95	M7YDJ9_TRIUA; Uncharacterized protein
STRING	TRIUR3_31671-P1	4e-96	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3653	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	3e-33	GRAS family protein

Publications ? help Back to Top
Li X, et al. Control of tillering in rice. Nature, 2003. 422(6932): p. 618-21 [PMID:12687001] Sun F, et al. Identification and functional analysis of the MOC1 interacting protein 1. J Genet Genomics, 2010. 37(1): p. 69-77 [PMID:20171579] Sanyal A, et al. Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum. Mol. Biol. Evol., 2010. 27(11): p. 2487-506 [PMID:20522726] Yan WH, et al. A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant, 2011. 4(2): p. 319-30 [PMID:21148627] Xu C, et al. Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering. Nat Commun, 2012. 3: p. 750 [PMID:22434193] Lin Q, et al. Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1. Nat Commun, 2012. 3: p. 752 [PMID:22434195] Liang WH,Shang F,Lin QT,Lou C,Zhang J Tillering and panicle branching genes in rice. Gene, 2014. 537(1): p. 1-5 [PMID:24345551] Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]