PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32002-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 171aa    MW: 20135.1 Da    PI: 9.6111
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32002-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.27.8e-1544811653
                     HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53
                     e++F+ ++yp+++ r++L+++lg++ +qVk+WFqN+R+
  TRIUR3_32002-P1 44 ESVFRDCPYPDEKLRKDLSERLGMSAQQVKFWFQNKRT 81
                     789**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.7E-83190IPR001356Homeobox domain
CDDcd000862.68E-104380No hitNo description
SuperFamilySSF466891.2E-114492IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-124481IPR009057Homeodomain-like
PROSITE profilePS5007112.9734486IPR001356Homeobox domain
PfamPF000462.6E-124481IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MYPTSTPSCT PFGGRNVPYS HSPFMDGLVD ACKVPYVYKS FGCESVFRDC PYPDEKLRKD  60
LSERLGMSAQ QVKFWFQNKR TFSKGKMQRW ETQNHWVENE RLKTEHQAIM LAMQNKTCLK  120
CRGVMVQTQD TSERQRLYTE NMRLKEELLH ATTYLKEGLR RNGMSLSWAR N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-111HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153975.17e-79homeobox-leucine zipper protein MERISTEM L1-like
TrEMBLM7ZK561e-127M7ZK56_TRIUA; Homeobox-leucine zipper protein ROC4
STRINGTRIUR3_32002-P11e-128(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16772512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.15e-25homeodomain GLABROUS 1