PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32111-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 431aa    MW: 46744.1 Da    PI: 10.6586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32111-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.65.7e-07159180223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F+r  nL+ H+r H
  TRIUR3_32111-P1 159 FCNICGKGFRRDANLRMHMRAH 180
                      6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.23E-6155180No hitNo description
SMARTSM003550.0018158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.635158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-6160180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035579206239IPR015880Zinc finger, C2H2-like
SMARTSM0035526244267IPR015880Zinc finger, C2H2-like
SuperFamilySSF577561.6E-8325356IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.4E-7327350IPR001878Zinc finger, CCHC-type
SMARTSM003430.0023334350IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.845335350IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.4E-7418431IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDSTTNQFAD AAAGASSANT APLPAMLADA LIGAGAGGGD GDPSAALQRL AALGDRMAAV  60
RRLLVASISG ESQPLSSSDI QSVSSEISSA AHLVVLNAAS LLSSSLPFPA PSAPPAPPAP  120
IQELPAAAST ADVLPQEATK GYDVVELDAD ELLAEHVHFC NICGKGFRRD ANLRMHMRAH  180
GDRFKTLDAL SRPGQAKPAD GRDVRFSCPF TGCNRNRAHR RFRPLKSAVC ARNHFRRSHC  240
PKLYACERCG GKKRFAVLAD LRGHLRHCDQ GVKPVTMVIM PVEIKKEHQV LMVHKNTSFK  300
KKGKGKKKGN FKKNGKIVAA QEKKPKFGPK PETECFYCKG TGHWKRKCPK YLADKKDGKV  360
NQIKNRTRVV EIKKEHPVLM VNKTTSFKKK GKGKKKGNFK KNGKQVAAQE KKPKSGPKPE  420
TECFYCKGTG H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4353251e-105HQ435325.1 Triticum aestivum clone BAC 1J9 Tmemb_185A domain-containing protein (1J9.1), EamA domain-containing protein (1J9.2), and Rht-D1b (Rht-D1b) genes, complete cds, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175848.10.0zinc finger protein STAR3-like
RefseqXP_020175849.10.0zinc finger protein STAR3-like
TrEMBLM7ZI810.0M7ZI81_TRIUA; Zinc finger protein STOP1-like protein
STRINGTRIUR3_32111-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.17e-49C2H2 family protein