PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_32469-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 719aa MW: 84027 Da PI: 6.3928

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_32469-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.9	1.9e-19	126	208	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA +GF+ ++ +++ + +k ++ C+++gk + + + +++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+l+p TRIUR3_32469-P1 126 RFYNTYALLTGFEAKRGTNYMR------KKFHLICNRSGKLRATPDL-QRKRKRKSIEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHPLCP 208 5***************9998......4678****9999988.99999**************.9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-17	126	208	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.2E-28	330	421	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.062	612	648	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 719 aa Download sequence Send to blast
LTQEPVGNQS MTEGRLQPAG DNYQDPSSDS IEKNTEGLLA DGQDQQTNSV YHPLQQAEEE 60 NQLHDIVESN EMLRNNSSSE TDSDSSSGSD SDSEVGKYFY PQIEQLEMAK QPEPGMKFQT 120 LEDAHRFYNT YALLTGFEAK RGTNYMRKKF HLICNRSGKL RATPDLQRKR KRKSIEKTNC 180 QAKVIVKLTK GQWEFTTVRN EHNHPLCPSA SLTKFYLSHK HISTEERSFL KVLQRTRIPP 240 NKVMKIFRRM RGSFGSIPFK KKDGTNLLCI EQHRKENSDV GRMLMYFKEK ELQDPSFQCM 300 KQTDEDNIVR SVFWTDARSR MDYEIFGDFL LFDTTYTTDR HNMLFAPIIG INNHGRTLLL 360 GCALLHDESA ETYKWMFETL LHVMEDKMPV SIITNQDEAM AKAIGEVMPQ VRHRLCKWDV 420 LEKAQQNISA FIAESGNIKA DLNSLIDNSL TEKEFEEGWD ALIERYGASE NEYLQLLWQR 480 RKNWVPVYFR EDFYPFVQSH GCDEGMNLLF NDYVLSIDRI EKFIERYEEI HKNITKTDEE 540 DRLQTGTVPS CFSLQPIEKH AADIYTRQIF LKVQRELLHS TAFNVQEVQR GAVYRLNKVF 600 NYENPEFDRN NFEVQVESGP NAFKCQCAKF TRDGILCCHI FRLFTQFGIN QIPEQYIVPR 660 WTEKFREEKE KQYKKKCSEQ MDTTMRYTNF MTKMADLGKT ICSDGAKYDA FMLEVDKIQ

Sequence ? help Back to Top

Protein Sequence Length: 719 aa Download sequence Send to blast

LTQEPVGNQS MTEGRLQPAG DNYQDPSSDS IEKNTEGLLA DGQDQQTNSV YHPLQQAEEE  60
NQLHDIVESN EMLRNNSSSE TDSDSSSGSD SDSEVGKYFY PQIEQLEMAK QPEPGMKFQT  120
LEDAHRFYNT YALLTGFEAK RGTNYMRKKF HLICNRSGKL RATPDLQRKR KRKSIEKTNC  180
QAKVIVKLTK GQWEFTTVRN EHNHPLCPSA SLTKFYLSHK HISTEERSFL KVLQRTRIPP  240
NKVMKIFRRM RGSFGSIPFK KKDGTNLLCI EQHRKENSDV GRMLMYFKEK ELQDPSFQCM  300
KQTDEDNIVR SVFWTDARSR MDYEIFGDFL LFDTTYTTDR HNMLFAPIIG INNHGRTLLL  360
GCALLHDESA ETYKWMFETL LHVMEDKMPV SIITNQDEAM AKAIGEVMPQ VRHRLCKWDV  420
LEKAQQNISA FIAESGNIKA DLNSLIDNSL TEKEFEEGWD ALIERYGASE NEYLQLLWQR  480
RKNWVPVYFR EDFYPFVQSH GCDEGMNLLF NDYVLSIDRI EKFIERYEEI HKNITKTDEE  540
DRLQTGTVPS CFSLQPIEKH AADIYTRQIF LKVQRELLHS TAFNVQEVQR GAVYRLNKVF  600
NYENPEFDRN NFEVQVESGP NAFKCQCAKF TRDGILCCHI FRLFTQFGIN QIPEQYIVPR  660
WTEKFREEKE KQYKKKCSEQ MDTTMRYTNF MTKMADLGKT ICSDGAKYDA FMLEVDKIQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	172	RKRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK360162	0.0	AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161795.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	T1NNY9	0.0	T1NNY9_TRIUA; Uncharacterized protein
STRING	TRIUR3_32469-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-81	FAR1-related sequence 5