PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32487-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 492aa    MW: 52376.3 Da    PI: 4.9571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32487-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.8e-07285309730
                      HHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                      ++Er+RR+++N+++ +Lr+l+P+  
  TRIUR3_32487-P1 285 IAERKRRKKLNNRLYTLRSLVPNiT 309
                      79********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.07E-6276310No hitNo description
SuperFamilySSF474591.7E-7276312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-4285309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-7285315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVGGGDYHQA VHGHGGGGGG TVEAALRPLV GGAHGWDYCI YWRLSPDQRF LEMTGFCCSA  60
EFEAQVATLA DVPSSIPLDS SSIGMHAQAL LSNQPIWQSS GGAPGPDLLT GYEAASSGGE  120
KTRLLVPVAG GIVELFASRY MAEEQQMAEL VMAQCGGGGQ GWQETEAQGF AWDAAADPGR  180
LYAAASLNLF DGAGGSGSGE PFLAGVLEDG AAGVGGQYAA ESSEPPSTVA QEHQQLHGSG  240
VGRADSGSER SDMQLGDPDD NVDGETQRGS GKDGGGKRQQ CKNLIAERKR RKKLNNRLYT  300
LRSLVPNITK EEEKEAEDQD MEPQVEVRQV EGKEFFLQVL CSHKSGRFVR IMDEIAALGL  360
QITSVNVTSY NKLVLNVFRA VVRPALAGRS PLSQPADRDS RWALVGLQMK DNEAAVPADR  420
VRDSLLEVTR EMYGGGGAWS SPLPPLPPPT NAKLDGMDGQ AVPAVAGEHY HQLHHQVLGG  480
YHHQHLHYLA MD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286293ERKRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3750740.0AK375074.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3084O15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177849.10.0transcription factor TDR-like
SwissprotQ6YUS35e-94TDR_ORYSJ; Transcription factor TDR
TrEMBLM7Z7S40.0M7Z7S4_TRIUA; Transcription factor ABORTED MICROSPORES
STRINGTRIUR3_32487-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-30bHLH family protein
Publications ? help Back to Top
  1. Endo M, et al.
    High temperatures cause male sterility in rice plants with transcriptional alterations during pollen development.
    Plant Cell Physiol., 2009. 50(11): p. 1911-22
    [PMID:19808807]
  2. Xu J,Wu M,He C
    [Identification and functional analysis of Tdrxoo, the member of TonB-dependent-receptor family proteins in Xanthomonas oryzae pv. oryzae].
    Wei Sheng Wu Xue Bao, 2010. 50(2): p. 155-61
    [PMID:20387456]
  3. Liu Z,Bao W,Liang W,Yin J,Zhang D
    Identification of gamyb-4 and analysis of the regulatory role of GAMYB in rice anther development.
    J Integr Plant Biol, 2010. 52(7): p. 670-8
    [PMID:20590996]
  4. Zhang D, et al.
    OsC6, encoding a lipid transfer protein, is required for postmeiotic anther development in rice.
    Plant Physiol., 2010. 154(1): p. 149-62
    [PMID:20610705]
  5. Senapati PK,Behera S
    Experimental investigation on an entrained flow type biomass gasification system using coconut coir dust as powdery biomass feedstock.
    Bioresour. Technol., 2012. 117: p. 99-106
    [PMID:22613886]
  6. Zhang SR,Dong DM,Zheng WG,Zhao XD,Wang JH
    [Laser-induced fluorescence spectroscopy characterization of farmland soil moisture content].
    Guang Pu Xue Yu Guang Pu Fen Xi, 2012. 32(10): p. 2623-7
    [PMID:23285852]
  7. Li L, et al.
    An anther development F-box (ADF) protein regulated by tapetum degeneration retardation (TDR) controls rice anther development.
    Planta, 2015. 241(1): p. 157-66
    [PMID:25236969]
  8. Yi J, et al.
    Defective Tapetum Cell Death 1 (DTC1) Regulates ROS Levels by Binding to Metallothionein during Tapetum Degeneration.
    Plant Physiol., 2016. 170(3): p. 1611-23
    [PMID:26697896]