PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32597-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 857aa    MW: 94679.3 Da    PI: 6.2314
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32597-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.4e-181211843499
                      SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      ++l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  TRIUR3_32597-P1 121 QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLLLGIRRA 184
                      47999*********************************************..7777778**99997 PP
2Auxin_resp116.42.5e-38209292183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  TRIUR3_32597-P1 209 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDDVRWPNSHWRSVK 292
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.9E-9102185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-26112198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-26112212IPR015300DNA-binding pseudobarrel domain
PfamPF023628.9E-16119184IPR003340B3 DNA binding domain
CDDcd100179.01E-13121183No hitNo description
PROSITE profilePS5086311.166122185IPR003340B3 DNA binding domain
PfamPF065072.0E-33209292IPR010525Auxin response factor
SuperFamilySSF542771.18E-7713794No hitNo description
PfamPF023093.7E-8715804IPR033389AUX/IAA domain
PROSITE profilePS5174522.381718802IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MRLSSPAGAV LPAQAPPSPE VAEEHKCLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ  60
VAASTNKEIE SQIPNYPNLP PQLICQLHNV TMHADAETDE VYAQMTLQPL NPDFTMQPPA  120
QELFAKDLHG NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNDNNQLLLG  180
IRRATRPQTV MPSSVLSSDS MHIGLLAAAA HAASTNSRFT IFYNPRASPC EFVIPLAKYV  240
KAVYHTRISV GMRFRMLFET EESSVRRYMG TITGISDLDD VRWPNSHWRS VKVGWDESTA  300
GERQPRVSLW EIEPLTTFPM YPTPFPLRLK RPWPTGLPSL HGGKDDDLTS SLMWLRDSAN  360
PGFQSLNFGG AGMNPWMQPR LDASLLGLQP DIYQTMAAAA FQDPTKMSPT MLQFQQPQNM  420
VGRATPLLQS QILQQMQPQF QQQSYLQNMN GTTIQGQAQS EFLQQQLQRC QSFNEQKPQL  480
LQQQESNQQQ SQGMQVPQHQ HMQQQKNMAN YQSAYSQLSP GPQSSPTALQ TALPFSQSQS  540
FSDTNMSSLS PSGAPAMHNT LGPFSSETAS HRSMSRPTAV PVPDSWSSKR VAVESLIPSR  600
PQSTTHMEQL SSTPPSIPQS SALAPLPGRG CLVDQDGSSD PQNHLLFGVN IDSHSLLMQG  660
GLHDENDSTA IPYSTSNFLS PSQHDFSLDQ TLNSSGCLDE SGYVPCSHTP DQVNQPPATF  720
VKVYKSGTYG RSLDITKFSN YHELRRELGR LFGLEGQLED PMRSGWQLVF VDREEDVLLV  780
GDDPWQEFVN SVSCIKILSP QEVQQMGKQG LELLSSAPGK RLGGGGGGSS CDDYASRQES  840
RSLSTGIASV GSVEVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1262831351388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157111.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLM7YWY80.0M7YWY8_TRIUA; Auxin response factor
STRINGTRIUR3_32597-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]