PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_32754-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 225aa MW: 25361.8 Da PI: 10.4087

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_32754-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.9	1e-49	10	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF P+deelv++yL+ kv+++++ + ++ evd++ +ePw+Lp +k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ + TRIUR3_32754-P1 10 LPPGFRFYPSDEELVCHYLHGKVANQRFAGgaAGTMVEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATRSGYWKATGKDRVI 103 79***********************65511346***********87788999********************************** PP NAM 93 lsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 s + + vg++ktLvfy+grap+g+kt Wvmhe+r+ TRIUR3_32754-P1 104 RSPrssssrsgRAAIVGMRKTLVFYRGRAPNGSKTCWVMHEFRI 147 99665555444444**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-59	7	166	IPR003441	NAC domain
PROSITE profile	PS51005	55.894	10	166	IPR003441	NAC domain
Pfam	PF02365	8.8E-28	11	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLHG KVANQRFAGG AAGTMVEVDL HVHEPWELPD 60 VAKLSTNEWY FFSFRDRKYA TGLRTNRATR SGYWKATGKD RVIRSPRSSS SRSGRAAIVG 120 MRKTLVFYRG RAPNGSKTCW VMHEFRIENP HAPPKEDWVL CRVFHKKKAD TEYAMDGEQE 180 IVGGMARSAA AVSGSTSSRP VIITTPTARP ASRSPTWTPS RTCHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	1	169	4	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	1	169	7	171	NAC domain-containing protein 19
3swm_B	1e-48	1	169	7	171	NAC domain-containing protein 19
3swm_C	1e-48	1	169	7	171	NAC domain-containing protein 19
3swm_D	1e-48	1	169	7	171	NAC domain-containing protein 19
3swp_A	1e-48	1	169	7	171	NAC domain-containing protein 19
3swp_B	1e-48	1	169	7	171	NAC domain-containing protein 19
3swp_C	1e-48	1	169	7	171	NAC domain-containing protein 19
3swp_D	1e-48	1	169	7	171	NAC domain-containing protein 19
4dul_A	1e-48	1	169	4	168	NAC domain-containing protein 19
4dul_B	1e-48	1	169	4	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364002	0.0	AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172962.1	1e-128	NAC domain-containing protein 92-like
Swissprot	Q9FLR3	4e-62	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	T1NPR0	1e-167	T1NPR0_TRIUA; Uncharacterized protein
STRING	TRIUR3_32754-P1	1e-168	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-72	NAC domain containing protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]