PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32761-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 146aa    MW: 15374.2 Da    PI: 6.7741
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32761-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32e-061071201326
                      S--TTTTT-SS-SS CS
          zf-CCCH  13 GtCkyGdrCkFaHg 26 
                      G C++G++C+F+H+
  TRIUR3_32761-P1 107 GGCRFGSNCHFIHD 120
                      89***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.718103122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5105120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSSASAPRDD AAIPPSVATP RYARSYSDGR LSIDSSDRPI VAREEEEGRS DVISRRTKRM  60
TYSRELLLAV GSLEACKLLP ADADLAKHPD DAALWVPSQT LAARSAGGCR FGSNCHFIHD  120
IPGGSQAVAE TSIPSGPAPA PKITGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164499.12e-37zinc finger CCCH domain-containing protein 14-like
TrEMBLT1NPR71e-100T1NPR7_TRIUA; Uncharacterized protein
STRINGTRIUR3_32761-P11e-101(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-06C3H family protein