PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32949-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 294aa    MW: 31503.2 Da    PI: 6.7396
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32949-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.31.7e-151041461456
                      HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       Le  F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k
  TRIUR3_32949-P1 104 GLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 146
                      6999*************************************99 PP
2HD-ZIP_I/II96.82.2e-311041821391
      HD-ZIP_I/II  13 lLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k +E+++++Lk+a+da   ++++Le+e  +L+e+l
  TRIUR3_32949-P1 104 GLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLMEEEFSKLKHAHDAAILHKCHLENELLRLKERL 182
                      59**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.1E-797152IPR001356Homeobox domain
PfamPF000467.8E-13104146IPR001356Homeobox domain
SuperFamilySSF466891.25E-12105147IPR009057Homeodomain-like
PROSITE profilePS5007114.042105148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-14105146IPR009057Homeodomain-like
CDDcd000861.45E-11105148No hitNo description
PRINTSPR000311.7E-5119128IPR000047Helix-turn-helix motif
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
PRINTSPR000311.7E-5128144IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MARTASGASC GERCDAREER EALGFHPRGK EVVAALVDVG ERRLANACGT PLHGRRTGVQ  60
CIGEQEGGRR RVGEAGWAGP CSHGTGGEPA EGAAQEAEGG EGQGLELSFR EERKLETGRK  120
VHLAAELGLD PKQVAVWFQN RRARHKSKLM EEEFSKLKHA HDAAILHKCH LENELLRLKE  180
RLGATEEEVR RLRSAAGSHG ASGNGGDAAD AVGACDGSPS SSFSTGTCQQ HPGFSGAGQL  240
GPDDELMMCV PEYGLHISFI GGCGSRKIFK HVLLENCFLV GQWSGNLWDF IFHG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4902340.0AB490234.1 Hordeum vulgare subsp. vulgare HvHox2 mRNA for homeodomain leucine zipper protein class 1, complete cds.
GenBankAK3684640.0AK368464.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2074A10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155462.12e-82homeobox-leucine zipper protein HOX14-like
SwissprotQ7XI855e-69HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLM8AZV70.0M8AZV7_TRIUA; Homeobox-leucine zipper protein HOX14
STRINGTRIUR3_32949-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-23homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]