PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33088-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 237aa    MW: 25764.5 Da    PI: 4.2974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33088-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-06197216120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k+F+r  n++ H+
  TRIUR3_33088-P1 197 FVCHVCSKTFNRYNNMQMHM 216
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.12E-5195221No hitNo description
Gene3DG3DSA:3.30.160.607.8E-5197216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.242197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESASLGVRY FEWLRPRSPR ASSPSSVPAS LSSPSSDCLV PGQDHPSTMM CLPLLGRVGA  60
GEETTSGGTP VGAQTSPVKE ELSGITEDAG VDLNIGLPAG GGYSSEEEVP PMAMSMDEDE  120
EEEEEEEVET DEEEEEKPRY ERCKVEAGVH VEHSEMLVES VEGSDLGSVG GEESSCCRHR  180
RFWIPTPAQI LIGAVQFVCH VCSKTFNRYN NMQMHMWGHG REYRKGPESL KGAAGQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3610540.0AK361054.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1131F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176127.11e-120protein TRANSPARENT TESTA 1-like
TrEMBLM7Z0V71e-171M7Z0V7_TRIUA; Protein TRANSPARENT TESTA 1
STRINGTRIUR3_33088-P11e-172(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-27WIP domain protein 3