PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33103-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 151aa    MW: 17176.2 Da    PI: 8.4697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33103-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42e-126590126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++t lC++++  GtCk+G +CkF+H+
  TRIUR3_33103-P1 65 PGTILCSYYMNHGTCKFGTNCKFHHP 90
                     6899*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.2776492IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-86493IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-66491IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-96690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-66793IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
NDLWHETSSN ASTWAEGNPA YVKNLTFNTN TFQYIFDKAC NYNRHEGKTK VRQVKLNFLG  60
LPLRPGTILC SYYMNHGTCK FGTNCKFHHP DPESEDAILN APQRTTQGSY QMNLSTKHVQ  120
RAPTIGTSEI IPTQGVNPCP EWSKYQVYNI S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179364.11e-23zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY21e-24C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLT1NQP41e-111T1NQP4_TRIUA; Uncharacterized protein
STRINGTRIUR3_33103-P11e-111(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-17C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]