PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33125-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 1762aa MW: 198869 Da PI: 8.1921

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33125-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.2	3.7e-15	1176	1255	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF +r +s+ + +++ ++++vC + g + +e+++ + r+gC+a++++ +++d+ w+++++++ HnH+l+ TRIUR3_33125-P1 1176 EFYNLYSWEIGFGIRFGRSRLNV-KKSKCMQELVCGCAGDSGKENSR---------SIRCGCDAMIRLLRSSDNGWYISQFNSAHNHALS 1255 6***************99994.44578899***98886555.........9****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48371	5.99E-48	44	266	IPR016024	Armadillo-type fold
Gene3D	G3DSA:1.25.10.10	9.8E-16	154	281	IPR011989	Armadillo-like helical
Pfam	PF12348	7.1E-24	176	278	IPR024395	CLASP N-terminal domain
Gene3D	G3DSA:1.25.10.10	9.8E-16	313	409	IPR011989	Armadillo-like helical
SMART	SM01349	1.6E-19	561	807	No hit	No description
SuperFamily	SSF48371	5.99E-48	572	799	IPR016024	Armadillo-type fold
Gene3D	G3DSA:1.25.10.10	9.8E-16	573	782	IPR011989	Armadillo-like helical
SMART	SM01349	0.0048	968	1220	No hit	No description
Gene3D	G3DSA:1.25.10.10	4.6E-14	981	1160	IPR011989	Armadillo-like helical
SuperFamily	SSF48371	5.99E-48	994	1163	IPR016024	Armadillo-type fold
Pfam	PF03101	1.4E-11	1176	1255	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005488	Molecular Function	binding

Sequence ? help Back to Top
Protein Sequence Length: 1762 aa Download sequence Send to blast
MANLLLLLVR HVALLLFSCD TDITEKPVEP IRVHSEKELF REIEKIASAL NPEKDWSIRI 60 AAMQRIEALK MHLCRSRSSL LYAKAELRGK SRGAIDYPSF FMLLKQLVHP LSSQLADRRS 120 SIVKQVKVYT EVGLSFKTAK ARGRVTGWAQ ACHLLNVLSK ELLSDFEACA EIFIPILRNC 180 KVSRIVPLIA DTAKNDRSAI LRARCCEYAL LILEYWADAP EIQRSADLYE DLIKCCVADA 240 MSEVRATARS CYRMFIKTWP ERSRRLFMSF DPAIQRIIND EDGGMHKRYP SSLHEKGAQL 300 SRSSSHASGT HLTGYGTSSI VAMDKGAAIS SESSLSSSML LSQSKATGRH AERSIESVLS 360 SSKQKVSAIE SLLKGVGISG RQNFSAVRST SLDLGVDPPS SRDPHIPLAA PASDHLSLQS 420 SALLDSSLPS ISIRRNGGSR LIDAMPQVDT KERSRSPYSR NLSSEPMSDL SVPYLRRSSG 480 RSQDDSIMDE SNDTWPRPNR RSPQMHTDKH FTDMAYRDAS YRNSQNNHVP HFQRPLRKQV 540 ASRVSVGVRH SFDDGHVPSN EMSGYTDGPA SLNEALSEGL SPSSDWVARV AAFNFVQTLL 600 QLGQKGIQEI TQNFEKVMKL FFRYLDDPHH KVAQAAFSTL ADIIPACKKP FESYVERILP 660 YVFSRLIDPK ELVSKPCSST LEVVGRTYAV DTLLPAIVRS LDEQRSPKAK LAVLEFANKS 720 FSKYKVDSEG YSNSGFLKLW LSKLAPLIHE KNAKLKETSI KGIISVYSHF DSTAVLNFIL 780 NLSIEEQNLV RRSLKQYTPR IEVDLVNYLQ SKKERSRPKS YEYEQIDFGT SEDGYNPTSR 840 NSYPFGRVSA SSFDNESGKR MHTVQESTFL TGRTTSDART DHANQCFEPS SEADIFTASR 900 ESKSNARSVV EAARSWADYP EKSDATIDDE NSVGTPRLDF VRRVSDGHNN AAVTTVGKII 960 QDMDQFVDLS SVKVVSHTTD GPSVPQLLHR IISNDGEVSS QDKQDALQQL LQASANNDNS 1020 IWTKILTTIL EVWDDSDSSV RELSLSLVAE MLRNQKDQME ESIEIILEKL VQMTKDVVAK 1080 ISNEANQCLN VVLAKYDPFR CLAVIVPLLV TDDEKTLVMC INCLTKLVGR LSQEELVAQL 1140 PSFLPALFDA FNNQSPDIRK KQTGGAHVFF CVEAHEFYNL YSWEIGFGIR FGRSRLNVKK 1200 SKCMQELVCG CAGDSGKENS RSIRCGCDAM IRLLRSSDNG WYISQFNSAH NHALSLTCGE 1260 KLHWKPHRYI DVHIKDLVKQ LREKNVSLSK VYSIVGSFFG AMENIPFTKR SLKVLCGKLS 1320 KDQSDHDATK TVQLLQDIKA ADHIFSYNVH VDDEARVKTL MWVTGKGIDH YRYFGDAITF 1380 DTTCRTNLYD MPFDQARAME LAIIDELPNT THKWCKWHVL KKAKESLGVL YGKKSEFKRD 1440 FQMLVHHVLT VEEFENGWDA MLLKYGLHKH PFLTQIYEVC CKWARPYFIG SFYAKMTSTQ 1500 HSESANHMIK CYVPPGCPMH LFLKQYEKIL FDRDSKESYQ EKRTTIAGVV LKGNWPIERH 1560 ARKIYTRAMF EKFGESLYKV GSYVTEEVIC KRKYLVRHVD AVKRESWCKG IFTVEVVDGM 1620 GEFVCERGFY PHSDILCCHT LKVMLDLRVS EIPTKHIMKR WTRDACDILP EDLVMYQNDQ 1680 GPPKANTYRH SKLYHAALSF VGQGDANVQS YEAAMLLIKH ASAKLEPLCV VRDGMGVGNR 1740 EAAAKSLAED QDNVMAQWDD CV

Sequence ? help Back to Top

Protein Sequence Length: 1762 aa Download sequence Send to blast

MANLLLLLVR HVALLLFSCD TDITEKPVEP IRVHSEKELF REIEKIASAL NPEKDWSIRI  60
AAMQRIEALK MHLCRSRSSL LYAKAELRGK SRGAIDYPSF FMLLKQLVHP LSSQLADRRS  120
SIVKQVKVYT EVGLSFKTAK ARGRVTGWAQ ACHLLNVLSK ELLSDFEACA EIFIPILRNC  180
KVSRIVPLIA DTAKNDRSAI LRARCCEYAL LILEYWADAP EIQRSADLYE DLIKCCVADA  240
MSEVRATARS CYRMFIKTWP ERSRRLFMSF DPAIQRIIND EDGGMHKRYP SSLHEKGAQL  300
SRSSSHASGT HLTGYGTSSI VAMDKGAAIS SESSLSSSML LSQSKATGRH AERSIESVLS  360
SSKQKVSAIE SLLKGVGISG RQNFSAVRST SLDLGVDPPS SRDPHIPLAA PASDHLSLQS  420
SALLDSSLPS ISIRRNGGSR LIDAMPQVDT KERSRSPYSR NLSSEPMSDL SVPYLRRSSG  480
RSQDDSIMDE SNDTWPRPNR RSPQMHTDKH FTDMAYRDAS YRNSQNNHVP HFQRPLRKQV  540
ASRVSVGVRH SFDDGHVPSN EMSGYTDGPA SLNEALSEGL SPSSDWVARV AAFNFVQTLL  600
QLGQKGIQEI TQNFEKVMKL FFRYLDDPHH KVAQAAFSTL ADIIPACKKP FESYVERILP  660
YVFSRLIDPK ELVSKPCSST LEVVGRTYAV DTLLPAIVRS LDEQRSPKAK LAVLEFANKS  720
FSKYKVDSEG YSNSGFLKLW LSKLAPLIHE KNAKLKETSI KGIISVYSHF DSTAVLNFIL  780
NLSIEEQNLV RRSLKQYTPR IEVDLVNYLQ SKKERSRPKS YEYEQIDFGT SEDGYNPTSR  840
NSYPFGRVSA SSFDNESGKR MHTVQESTFL TGRTTSDART DHANQCFEPS SEADIFTASR  900
ESKSNARSVV EAARSWADYP EKSDATIDDE NSVGTPRLDF VRRVSDGHNN AAVTTVGKII  960
QDMDQFVDLS SVKVVSHTTD GPSVPQLLHR IISNDGEVSS QDKQDALQQL LQASANNDNS  1020
IWTKILTTIL EVWDDSDSSV RELSLSLVAE MLRNQKDQME ESIEIILEKL VQMTKDVVAK  1080
ISNEANQCLN VVLAKYDPFR CLAVIVPLLV TDDEKTLVMC INCLTKLVGR LSQEELVAQL  1140
PSFLPALFDA FNNQSPDIRK KQTGGAHVFF CVEAHEFYNL YSWEIGFGIR FGRSRLNVKK  1200
SKCMQELVCG CAGDSGKENS RSIRCGCDAM IRLLRSSDNG WYISQFNSAH NHALSLTCGE  1260
KLHWKPHRYI DVHIKDLVKQ LREKNVSLSK VYSIVGSFFG AMENIPFTKR SLKVLCGKLS  1320
KDQSDHDATK TVQLLQDIKA ADHIFSYNVH VDDEARVKTL MWVTGKGIDH YRYFGDAITF  1380
DTTCRTNLYD MPFDQARAME LAIIDELPNT THKWCKWHVL KKAKESLGVL YGKKSEFKRD  1440
FQMLVHHVLT VEEFENGWDA MLLKYGLHKH PFLTQIYEVC CKWARPYFIG SFYAKMTSTQ  1500
HSESANHMIK CYVPPGCPMH LFLKQYEKIL FDRDSKESYQ EKRTTIAGVV LKGNWPIERH  1560
ARKIYTRAMF EKFGESLYKV GSYVTEEVIC KRKYLVRHVD AVKRESWCKG IFTVEVVDGM  1620
GEFVCERGFY PHSDILCCHT LKVMLDLRVS EIPTKHIMKR WTRDACDILP EDLVMYQNDQ  1680
GPPKANTYRH SKLYHAALSF VGQGDANVQS YEAAMLLIKH ASAKLEPLCV VRDGMGVGNR  1740
EAAAKSLAED QDNVMAQWDD CV

Functional Description ? help Back to Top
Source	Description
UniProt	Cortical microtubule plus-end tracking protein required for cell morphogenesis and cell division. Promotes the stabilization of dynamic microtubules during mitosis. Regulates microtubule-cortex attachment, thereby contributing to self-organization of cortical microtubules and subsequent cell shape. {ECO:0000269\|PubMed:17873093, ECO:0000269\|PubMed:18042620, ECO:0000269\|PubMed:18716054, ECO:0000269\|PubMed:21847104, ECO:0000269\|PubMed:22500804}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184766.1	0.0	CLIP-associated protein-like isoform X2
Swissprot	Q8RWY6	0.0	CLASP_ARATH; CLIP-associated protein
TrEMBL	M7YPS2	0.0	M7YPS2_TRIUA; Protein FAR1-RELATED SEQUENCE 5
STRING	TRIUR3_33125-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-54	FAR1-related sequence 5

Publications ? help Back to Top
Ambrose JC,Shoji T,Kotzer AM,Pighin JA,Wasteneys GO The Arabidopsis CLASP gene encodes a microtubule-associated protein involved in cell expansion and division. Plant Cell, 2007. 19(9): p. 2763-75 [PMID:17873093] Kirik V, et al. CLASP localizes in two discrete patterns on cortical microtubules and is required for cell morphogenesis and cell division in Arabidopsis. J. Cell. Sci., 2007. 120(Pt 24): p. 4416-25 [PMID:18042620] Ambrose JC,Wasteneys GO CLASP modulates microtubule-cortex interaction during self-organization of acentrosomal microtubules. Mol. Biol. Cell, 2008. 19(11): p. 4730-7 [PMID:18716054] Ambrose C,Allard JF,Cytrynbaum EN,Wasteneys GO A CLASP-modulated cell edge barrier mechanism drives cell-wide cortical microtubule organization in Arabidopsis. Nat Commun, 2011. 2: p. 430 [PMID:21847104] Ambrose C, et al. CLASP interacts with sorting nexin 1 to link microtubules and auxin transport via PIN2 recycling in Arabidopsis thaliana. Dev. Cell, 2013. 24(6): p. 649-59 [PMID:23477787] Kakar K,Zhang H,Scheres B,Dhonukshe P CLASP-mediated cortical microtubule organization guides PIN polarization axis. Nature, 2013. 495(7442): p. 529-33 [PMID:23515161] Gardiner J The evolution and diversification of plant microtubule-associated proteins. Plant J., 2013. 75(2): p. 219-29 [PMID:23551562] Pietra S, et al. Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity. Nat Commun, 2013. 4: p. 2779 [PMID:24240534] Hamada T Microtubule organization and microtubule-associated proteins in plant cells. Int Rev Cell Mol Biol, 2014. 312: p. 1-52 [PMID:25262237] Nakamoto M,Schmit AC,Heintz D,Schaller H,Ohta D Diversification of sterol methyltransferase enzymes in plants and a role for β-sitosterol in oriented cell plate formation and polarized growth. Plant J., 2015. 84(5): p. 860-74 [PMID:26426526] Xiao C,Zhang T,Zheng Y,Cosgrove DJ,Anderson CT Xyloglucan Deficiency Disrupts Microtubule Stability and Cellulose Biosynthesis in Arabidopsis, Altering Cell Growth and Morphogenesis. Plant Physiol., 2016. 170(1): p. 234-49 [PMID:26527657] Brumbarova T,Ivanov R Differential Gene Expression and Protein Phosphorylation as Factors Regulating the State of the Arabidopsis SNX1 Protein Complexes in Response to Environmental Stimuli. Front Plant Sci, 2016. 7: p. 1456 [PMID:27725825] Thoms D,Vineyard L,Elliott A,Shaw SL CLASP Facilitates Transitions between Cortical Microtubule Array Patterns. Plant Physiol., 2018. 178(4): p. 1551-1567 [PMID:30327382]