PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33331-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 233aa MW: 27067.5 Da PI: 9.0883

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33331-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.4	1.4e-14	108	146	18	56
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +F++++yp+++ r+ L+k+lg++ +qVk+WFqN+R k TRIUR3_33331-P1 108 VFRESPYPDEKLRKTLSKRLGMSAQQVKFWFQNHRSSSK 146 69*********************************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-14	58	143	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.55E-11	70	146	IPR009057	Homeodomain-like
SMART	SM00389	2.1E-6	75	152	IPR001356	Homeobox domain
CDD	cd00086	1.07E-9	76	146	No hit	No description
Pfam	PF00046	5.6E-12	108	146	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.811	109	148	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	123	146	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MDGEFQRDNN LVHNDLDVFM TTEQNHLFQK NHDEEIYGLL GGTANAGKID NASDVAADKG 60 NNDGETHSEH RMETRRGNYH RLRREQIQQL EAYNTYSINV SYLSKMIVFR ESPYPDEKLR 120 KTLSKRLGMS AQQVKFWFQN HRSSSKGKTL RQEASNLQLE KQMLKSERQA IISAMQNSTC 180 LKCRGTIVQT QDTSERQRLF MENLKLKEEL LLATKHLKEG LQQNSMWPVL TCK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167363.1	1e-126	homeobox-leucine zipper protein HDG7-like
TrEMBL	M8AMK3	1e-174	M8AMK3_TRIUA; Homeobox-leucine zipper protein ROC4
STRING	TRIUR3_33331-P1	1e-175	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16772	5	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	4e-19	HD-ZIP family protein