PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33405-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 173aa    MW: 18651.3 Da    PI: 5.0201
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33405-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-19701163985
                      EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  39 edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      +d +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++
  TRIUR3_33405-P1  70 RDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 116
                      6889****************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001949123IPR003340B3 DNA binding domain
PfamPF023621.5E-1670116IPR003340B3 DNA binding domain
CDDcd100173.17E-1670116No hitNo description
SuperFamilySSF1019361.83E-1770119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-2070132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.63270134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MASGKATNHG MEDDNDMEYS SAESGAEDAA ESSSSPVLAP PRAAPSSRFK GVVPQPNGRW  60
GAQIYEKHSR DGDGKVWRFR YSYWNSSQSY VLTKGWSRFV KETGLRAGDT VAFYRSAYGN  120
DTEDQLFIDY KKMNKNDDAA DAAISNENET GHVAVKLFGV DIAGGGMAGS SGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-237113758121DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-163HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191027.11e-57putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS73e-35Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLT1NRI21e-124T1NRI2_TRIUA; Uncharacterized protein
STRINGTRIUR3_33405-P11e-125(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3711133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-26related to ABI3/VP1 2