PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33501-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 612aa    MW: 68368.2 Da    PI: 6.1737
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33501-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23112213199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g  W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +
  TRIUR3_33501-P1 112 FCKTLTASDTSTHGGFSVLRRHAEEClppldmSQNPPC-QELVAKDLHGTDWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGE 202
                      99*****************************7556666.59************************************************..449 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+v+v+r+
  TRIUR3_33501-P1 203 NGELRVGVRRH 213
                      999******96 PP
2Auxin_resp98.87.5e-33238323183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                      a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt++g+     ++++ W +S W+sLk
  TRIUR3_33501-P1 238 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNISVGMRFKMKFEGDEALERRFSGTIIGIGStptVSTSLWADSDWKSLK 323
                      789**************************************************************98622256678********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-44101241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-41110227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-21110212No hitNo description
SMARTSM010194.0E-21112214IPR003340B3 DNA binding domain
PfamPF023622.5E-21112213IPR003340B3 DNA binding domain
PROSITE profilePS5086311.617112214IPR003340B3 DNA binding domain
PfamPF065072.4E-31238323IPR010525Auxin response factor
PROSITE profilePS5174523.4520612IPR000270PB1 domain
SuperFamilySSF542771.96E-10523599No hitNo description
PfamPF023096.3E-8567611IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
GICSDALFRE LWHACAGPLI TVPRQGERVY YFPQGHMEQL EASTNQQLDQ YLPMFNLPSK  60
ILCSVVNVEL RTEADSDEVY AQIMLQPEAN QGELTSLGPE PKELEKGTIH SFCKTLTASD  120
TSTHGGFSVL RRHAEECLPP LDMSQNPPCQ ELVAKDLHGT DWHFRHIFRG QPRRHLLTTG  180
WSVFVSSKRL VAGDAFIFLR GENGELRVGV RRHMRQVNNM PSSVISSHSM HLGVLATASH  240
AISTGTLFSV FYKPRTSQSE FVVSVNKYLE AKKQNISVGM RFKMKFEGDE ALERRFSGTI  300
IGIGSTPTVS TSLWADSDWK SLKVQWDEPS SILRPDRVSP WELEPLDAAN PQPPQPPLRN  360
KRPRLPASPS VVPELAPKFG LWKSPAEPSQ TLSFSEPQQA RGLFTNSRFS SSSNVAFNQF  420
YWPARESRED SYAGSTNKVT VERKLEPAAG GCRLFGIEIR SAVEETQPVL TVSGDGYDQT  480
AASVDVDSGE LSQPSNMNNS GAQAASSERA LLETQSRQVR SCTKVIMTGM AVGRAVDLTK  540
LYGYVDLHRK LEEMFDIQGE LCSTLKKWQV VYADEEDDMM LVGDDPWDEF CNMAKRIYIY  600
TYEEAKQLAP KA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0134813357Auxin response factor 1
4ldw_A0.0134813357Auxin response factor 1
4ldw_B0.0134813357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162394.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A3B6B1170.0A0A3B6B117_WHEAT; Auxin response factor
TrEMBLA0A446L4X20.0A0A446L4X2_TRITD; Auxin response factor
STRINGTraes_2AL_89543BA1A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]