PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33615-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 142aa    MW: 14698.8 Da    PI: 4.8727
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33615-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.54.1e-141042234
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdae 34
                     rienk  r + fskRr+g++ KA+EL v+C+a+
  TRIUR3_33615-P1 10 RIENKAARDICFSKRRQGLFRKANELAVMCGAQ 42
                     8******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.23E-16143IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.554143IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-16158IPR002100Transcription factor, MADS-box
CDDcd001201.62E-19244No hitNo description
PRINTSPR004049.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-151043IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-112338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRKKIVIRR IENKAARDIC FSKRRQGLFR KANELAVMCG AQLGGTSADG GMEELMTVIA  60
GFGGLELDGT SLNGGMDQMV TVMPTPGFVG GVGCEPDPWF ELGGTSASGR MDDVMTAIAG  120
GAGFELGGIS VNGGTEHSPA WV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194307.12e-76agamous-like MADS-box protein AGL12
TrEMBLM8A6P93e-97M8A6P9_TRIUA; MADS-box transcription factor 27
STRINGTRIUR3_33615-P15e-98(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.21e-13MIKC_MADS family protein