PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33679-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 140aa    MW: 15303.7 Da    PI: 4.3043
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33679-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26027.59e-09440137
           DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklF 37
                     +C++C+vlr++C++dC ++p++     p++q++++      F
  TRIUR3_33679-P1  4 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATV-----F 40
                     6*********************55555544444443.....3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.3E-5439IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LANHESSDSR HEDPGEPHYQ  60
QEASADTEAE AGSHVSQAEQ EQEQSTEPAA EHAEEVEKEE DEELALELTL GFAPVAARPA  120
GFHLSVRTAA EPAFVGLRFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514261e-114AK251426.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence.
GenBankAK3619131e-114AK361913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001D20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176408.12e-36LOB domain-containing protein 40-like
TrEMBLM7YED18e-97M7YED1_TRIUA; Uncharacterized protein
STRINGTRIUR3_33679-P11e-97(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-24LOB domain-containing protein 41