PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33706-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 1686aa MW: 191221 Da PI: 6.9563

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33706-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52	2.3e-16	25	89	24	90
FAR1 24 rngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++ ++rtf+Cs++g+r+e+k++ e+ +r+etr+gC+a++k++++ dg ++v+++e HnH+la TRIUR3_33706-P1 25 QSHAPKQRTFTCSRQGHRREDKRE-ETFTYSRPETRCGCDARMKISLR-DGFYYVYEFEASHNHTLA 89 4566789************999.99999**************.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-12	25	89	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.5E-30	211	305	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	482	529	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-5	501	525	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-5	504	531	IPR006564	Zinc finger, PMZ-type
Gene3D	G3DSA:1.25.40.10	5.1E-5	1079	1165	IPR011990	Tetratricopeptide-like helical domain
PROSITE profile	PS50236	25.457	1127	1278	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
Pfam	PF00637	6.2E-14	1135	1251	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
PROSITE profile	PS50236	11.565	1296	1507	IPR000547	Clathrin, heavy chain/VPS, 7-fold repeat
Gene3D	G3DSA:1.25.40.10	5.1E-5	1326	1356	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:1.25.40.10	5.1E-5	1455	1479	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:3.30.40.10	3.8E-4	1579	1632	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	8.83E-5	1592	1633	No hit	No description
CDD	cd00162	0.00235	1592	1628	No hit	No description
PROSITE profile	PS50089	9.288	1593	1628	IPR001841	Zinc finger, RING-type
Pfam	PF12451	2.7E-14	1633	1675	IPR024763	Vacuolar protein sorting protein 11, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006886	Biological Process	intracellular protein transport
GO:0016192	Biological Process	vesicle-mediated transport
GO:0009705	Cellular Component	plant-type vacuole membrane
GO:0043234	Cellular Component	protein complex
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1686 aa Download sequence Send to blast
MASPSLASLT TSPRSVPWNQ DTYEQSHAPK QRTFTCSRQG HRREDKREET FTYSRPETRC 60 GCDARMKISL RDGFYYVYEF EASHNHTLAN GLMAQYLRSQ RKVTEAQIAN IEVTKSVGIS 120 NKATIDLMAK EAGGSENLGF TPQDMKNCLY SKRTIKAKVG DTGGVLEYME KKVSEDVNFF 180 YSIQVDEDEL ITNIFWADSK MVSDYAMFGD VICFDTTYRK LDDGRPFGLI VGVNNHKKTI 240 VFGAALLYDE TAASFAWLFR TFLKVMSGKH PRTILTDEDA AMAKAIREVF PHSHHRLCVW 300 HMNQNTCKHL AGVVDEYKKF NVDFQHCIYD IEEEDEFVGA WDKMIDKYGL CDNEWLQRLF 360 EKKEHWALVY GKNMFSARMS TTQRSESMNN ELKRYISIKY DMLTFFEHFE RLVSDKRCEE 420 VKYDFKATQT TPKLKAESSY MLKQAAATYT PAIFKMVQDQ VLRTLNYDMI LCDESDTEVK 480 IYVVKFHGTQ REHVVRFIPK EEKVSCSCKR FEFAGILCSH CLKVLDINNI KHIPGEYILK 540 RWTIDAKVLD ITSKCNPHDN LKARMSNCYK ELCIIFVKIA ARAAESEESY YKAQLAQDVE 600 KCLKIRADPD LVSVDPHLVH VDPNLVHGDP DLVSANQDLV SADPDLGNSI TKEGTNIASS 660 RISKHGEGLA KPKGMKVKEK TVKGSKRPIG GFEKATSKKK KNTNDIVHLE PRGPSTGPLK 720 KATLKKKKNT NDIIQLQPHD LPTGHPTNNM YTSLQGTIGA SNSGLMTGEN QDFLHQPNPA 780 SILNASMLQS SGHTIPMPPH IQEYGNTPVQ RNVLVTVGDD DQASSQSSAV CLKVFDLDKV 840 QEEGSSTTTP FCVQILRVFT NQFPEAKITS FLVLEEAPPI LFIAIGLDNG CIYCIKGDIA 900 RERITRFTLQ VEPVSDGTSS PITGLGFRVE GQAHQLFAIT PSSITLFSLH HQPPRRQTLD 960 QIGCETNAVA MSDRMDLIVG RPEAVYFYEV DGRGPCWAFD GEKKFVGWFR GYLLCIIEDQ 1020 RSRKNTLNVY DLKNRLIAHS MPVGDVSHLV TEWGYIILIM SDKRILCIGE KDMESKLDML 1080 FKKNLYTVAI NLVQSQQADP ASTAEVLRKY GDHLYGKQEY DEAMSQYIHT IGHLEPSYVI 1140 QKFLDAKRIH NLTNYLEKLH DRGLASKDHT TLLLNCYTKL KDVEKLNHFI KDEDGVGEIK 1200 FDVETAIRVC RAAGYHEHAM FVAKKAGRHE LYLKILLEDL ARYDEALQYI SGLEANQAGL 1260 TVKEYGKILV DHRPAETVKI LLRLCTDGGD PTTRRGSNSM RLLMIPSPMD FVNIFVHSPQ 1320 YLMEFLENYI KAVKDSPAQT EIHNTLLELY ISKDLSFPSM SQENGFDDHN SKERKGKEIT 1380 NGYKSGTREK AKLGKEENKT AKDIVDRQRK GLALLKSAWT PEMEEPLYSV DLALIICNAN 1440 AFKDGLLFLY EKLKLYKEVI SCYKQAHDHE GLIACCKKLG DSTQGGDPSL WGDLLNYFGE 1500 LGEDCSKEVK EVLTYVEKAD VLPPIVVLQT LSKNPCLTLS VVKDYIARKL EQESKLIEDD 1560 RKSVDKYQEE TELMKREIED LKTNAKVFQL SKCTACTFTL DLPAVHFMCM HSFHLRCLGD 1620 NEKECPECAP EYRSVMEAKQ KLELNARDHD LFFRQLRGSK DGFSVVADYF SKGVVSKTTI 1680 PPENAP

Sequence ? help Back to Top

Protein Sequence Length: 1686 aa Download sequence Send to blast

MASPSLASLT TSPRSVPWNQ DTYEQSHAPK QRTFTCSRQG HRREDKREET FTYSRPETRC  60
GCDARMKISL RDGFYYVYEF EASHNHTLAN GLMAQYLRSQ RKVTEAQIAN IEVTKSVGIS  120
NKATIDLMAK EAGGSENLGF TPQDMKNCLY SKRTIKAKVG DTGGVLEYME KKVSEDVNFF  180
YSIQVDEDEL ITNIFWADSK MVSDYAMFGD VICFDTTYRK LDDGRPFGLI VGVNNHKKTI  240
VFGAALLYDE TAASFAWLFR TFLKVMSGKH PRTILTDEDA AMAKAIREVF PHSHHRLCVW  300
HMNQNTCKHL AGVVDEYKKF NVDFQHCIYD IEEEDEFVGA WDKMIDKYGL CDNEWLQRLF  360
EKKEHWALVY GKNMFSARMS TTQRSESMNN ELKRYISIKY DMLTFFEHFE RLVSDKRCEE  420
VKYDFKATQT TPKLKAESSY MLKQAAATYT PAIFKMVQDQ VLRTLNYDMI LCDESDTEVK  480
IYVVKFHGTQ REHVVRFIPK EEKVSCSCKR FEFAGILCSH CLKVLDINNI KHIPGEYILK  540
RWTIDAKVLD ITSKCNPHDN LKARMSNCYK ELCIIFVKIA ARAAESEESY YKAQLAQDVE  600
KCLKIRADPD LVSVDPHLVH VDPNLVHGDP DLVSANQDLV SADPDLGNSI TKEGTNIASS  660
RISKHGEGLA KPKGMKVKEK TVKGSKRPIG GFEKATSKKK KNTNDIVHLE PRGPSTGPLK  720
KATLKKKKNT NDIIQLQPHD LPTGHPTNNM YTSLQGTIGA SNSGLMTGEN QDFLHQPNPA  780
SILNASMLQS SGHTIPMPPH IQEYGNTPVQ RNVLVTVGDD DQASSQSSAV CLKVFDLDKV  840
QEEGSSTTTP FCVQILRVFT NQFPEAKITS FLVLEEAPPI LFIAIGLDNG CIYCIKGDIA  900
RERITRFTLQ VEPVSDGTSS PITGLGFRVE GQAHQLFAIT PSSITLFSLH HQPPRRQTLD  960
QIGCETNAVA MSDRMDLIVG RPEAVYFYEV DGRGPCWAFD GEKKFVGWFR GYLLCIIEDQ  1020
RSRKNTLNVY DLKNRLIAHS MPVGDVSHLV TEWGYIILIM SDKRILCIGE KDMESKLDML  1080
FKKNLYTVAI NLVQSQQADP ASTAEVLRKY GDHLYGKQEY DEAMSQYIHT IGHLEPSYVI  1140
QKFLDAKRIH NLTNYLEKLH DRGLASKDHT TLLLNCYTKL KDVEKLNHFI KDEDGVGEIK  1200
FDVETAIRVC RAAGYHEHAM FVAKKAGRHE LYLKILLEDL ARYDEALQYI SGLEANQAGL  1260
TVKEYGKILV DHRPAETVKI LLRLCTDGGD PTTRRGSNSM RLLMIPSPMD FVNIFVHSPQ  1320
YLMEFLENYI KAVKDSPAQT EIHNTLLELY ISKDLSFPSM SQENGFDDHN SKERKGKEIT  1380
NGYKSGTREK AKLGKEENKT AKDIVDRQRK GLALLKSAWT PEMEEPLYSV DLALIICNAN  1440
AFKDGLLFLY EKLKLYKEVI SCYKQAHDHE GLIACCKKLG DSTQGGDPSL WGDLLNYFGE  1500
LGEDCSKEVK EVLTYVEKAD VLPPIVVLQT LSKNPCLTLS VVKDYIARKL EQESKLIEDD  1560
RKSVDKYQEE TELMKREIED LKTNAKVFQL SKCTACTFTL DLPAVHFMCM HSFHLRCLGD  1620
NEKECPECAP EYRSVMEAKQ KLELNARDHD LFFRQLRGSK DGFSVVADYF SKGVVSKTTI  1680
PPENAP

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment. {ECO:0000269\|PubMed:12589039}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354061	0.0	AK354061.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1004L16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020196649.1	0.0	vacuolar protein-sorting-associated protein 11 homolog
Swissprot	Q9SJ40	0.0	VPS11_ARATH; Vacuolar protein-sorting-associated protein 11 homolog
TrEMBL	M8A192	0.0	M8A192_TRIUA; Vacuolar protein sorting-associated protein 11-like protein
STRING	TRIUR3_33706-P1	0.0	(Triticum urartu)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1-related sequence 5

Publications ? help Back to Top
Rojo E,Zouhar J,Kovaleva V,Hong S,Raikhel NV The AtC-VPS protein complex is localized to the tonoplast and the prevacuolar compartment in arabidopsis. Mol. Biol. Cell, 2003. 14(2): p. 361-9 [PMID:12589039] Takemoto K, et al. Distinct sets of tethering complexes, SNARE complexes, and Rab GTPases mediate membrane fusion at the vacuole in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(10): p. E2457-E2466 [PMID:29463724]