PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33729-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 982aa    MW: 107556 Da    PI: 6.1134
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33729-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.93.9e-40154231178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC adls ak+yhrrhkvCe+h+ka++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  TRIUR3_33729-P1 154 ACQVEGCCADLSAAKDYHRRHKVCEMHAKANTAVVGNTVQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTRP 231
                      5**************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-33147216IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.291152229IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.88E-37153232IPR004333Transcription factor, SBP-box
PfamPF031106.1E-29155228IPR004333Transcription factor, SBP-box
SuperFamilySSF484034.66E-7762867IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-6764869IPR020683Ankyrin repeat-containing domain
CDDcd002042.90E-8767866No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 982 aa     Download sequence    Send to blast
MDMEAARVGS QSRHLYGGGL GGELEQARRE KRVFGWDLND WSWDSERFVA TPVPAAVGNG  60
LSLNSSPSSS EEAGAEVSRN GNVRGDFDKR KRVVVIHDDD EKDEGPVGSS NNVLSLRIGG  120
NSVAGGAVED GGVNEEDRNG KKIRVQGGSS SGPACQVEGC CADLSAAKDY HRRHKVCEMH  180
AKANTAVVGN TVQRFCQQCS RFHLLQEFDE GKRSCRRRLA GHNKRRRKTR PENAVGGTPI  240
EEKVSSYLLL SLLGICANLN SDNAEHLQGQ ELLSNLWRNL GNVAKSLDPK ELCKLLETCQ  300
SMQNRSNAGT SEAANALVNT AAAEAAGPSN SKAPFANGGE CGQTSSAVVP VQSNTTMVAA  360
TETPACKFRN FDLNDTCNDV EGFEDGLNCP SWIRQDSTQS PPQTSGNSDS TSAQSLSSSN  420
GDAQCRTDKI VFKLFEKVPS ELPPILRSQI LGWLSSSPTD IESHIRPGCI ILTVYLRLVE  480
SSWRELSENM SVYLDKLSSS SADNFWTSGL VFVMVRRQIA FMHNGSIKLY VNVLLISPYG  540
HITAGQVMLD RPLAPNSHHY CKVLCVSPVA APYSATVNFR VEGFNLVSSS SRLICSIEGR  600
CIFEEDTAIM ADDAEDEDIE YLNFCCSLPD TRGRGFIEVE DSGFSNGFFP FIVAEQNVCS  660
EVCELESTFK SSSLEQPDKD NAMNQALEFL HELGWLLHRV NIISKRDKVE PPVPAFNLLR  720
FRNLGIFAME REWCAVTKML LDLLFDGFVD AGLQSPKEVV LSENLVHSAV RGKSARMVRF  780
LLTYKPNKNL KETAETYLFR PDARGPSAFT PLHIAASTSD AEDVLDALTD DPGLVGLNAW  840
RNARDEIGFT PEDYARQRGN DAYINLVQKK IDRHVGKGHV VLGVPSSMCP GITDGLKAGD  900
ISLEICKAMP MTTTSAARCN ICSRQAKMYP NSFARTFLYR PAMFTVMGVA VICVCVGILL  960
HTLPKVYAAP NFRWELLERG AM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-31148228484squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478800.0KF447880.1 Triticum aestivum squamosa promoter-binding-like protein 6 (SPL6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169994.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLM7YUL70.0M7YUL7_TRIUA; Squamosa promoter-binding-like protein 6
STRINGTRIUR3_33729-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]