PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33816-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 211aa    MW: 22906.6 Da    PI: 7.0577
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33816-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12162207655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk Lq
  TRIUR3_33816-P1 162 SIAERERRTRISKRLRRLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 207
                      689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.922156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14159210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-13160211No hitNo description
Gene3DG3DSA:4.10.280.102.4E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-7162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGGARGGMGS GYAHSQGGGN VDAMAAQQRR LSSQWSFSRQ QDMMPHIAEM GMAMHTPTPM  60
PPADSIGPGH GNGSGDLSRS FSMSSWDDTN SNIIFSAPSG GGKKAKLMAD GDDGMVTSYS  120
NIDSQFGSSL DMPGMDDYLQ LQQDSVACRV RAKRGCATHP RSIAERERRT RISKRLRRLQ  180
DLVPNMDKQT NTSDMLDIAV DYIKVLQDQI E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690830.0AK369083.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085A02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198304.11e-132transcription factor bHLH128-like
TrEMBLT1NSM11e-153T1NSM1_TRIUA; Uncharacterized protein
STRINGTRIUR3_33816-P11e-154(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-32bHLH family protein