PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_33826-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 537aa MW: 58332.6 Da PI: 5.3554

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_33826-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	62.6	9.3e-20	49	136	13	87
trihelix 13 arremeerlrrgklkkplWeevskkm...............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +r+em+ ++r+++lk+p Weevs++ +e g++rs+k+Ckek+en+ k+y+++keg+ +r ++ +++++f++lea TRIUR3_33826-P1 49 IRSEMDGAFRNAALKAPVWEEVSRREskrrpltatrfcrklAELGYRRSAKKCKEKFENVDKYYRRTKEGRAGR--QDGKNYRFFKELEA 136 79********************************************************************97..66678****985 PP
2	trihelix	106.5	1.8e-33	251	336	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r e++e+ ++ +k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a TRIUR3_33826-P1 251 RWPKEEVHALIQLRMEKDEHCQDMGAKGPLWEDISAGMRRIGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 336 8******************************************************************97.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.08E-15	49	116	No hit	No description
Pfam	PF13837	1.4E-10	51	137	No hit	No description
PROSITE profile	PS50090	7.712	244	308	IPR017877	Myb-like domain
SMART	SM00717	0.003	248	310	IPR001005	SANT/Myb domain
CDD	cd12203	2.43E-25	250	315	No hit	No description
Pfam	PF13837	1.0E-21	251	337	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MGFLKYQLPD LYIIGHINTV LEPQGNSKEG GVVVVAAAMQ HPEQGGAGIR SEMDGAFRNA 60 ALKAPVWEEV SRRESKRRPL TATRFCRKLA ELGYRRSAKK CKEKFENVDK YYRRTKEGRA 120 GRQDGKNYRF FKELEALHAA APQQNQHMAT AAPILPDPRP LAMAPAYPGA GLPDLSLSSN 180 SESESDDESD EEEDQAGGGG GRSNESMMAL FEGMIKQITE KQDATQRLRV VAAPEEGGRR 240 GGGESSAGMS RWPKEEVHAL IQLRMEKDEH CQDMGAKGPL WEDISAGMRR IGYNRSSKRC 300 KEKWENINKY FKKVKESNKR RPEDSKTCPY FHQLDAIYRK KQSAVSNAAG GCSSTASGNA 360 VAAVNASASE QHNPWRELEG KISNDFDRRH SVGGGSSDAP PGDGEVAAAS TVLDAIATTK 420 VMTQTSESLS MPSIACNLIA IGLGQKSEDN VMAMESNIQS QQTEVTATDE TDSDDIEGNY 480 TDDGDDDDGD EDDKMKYTIE FQKHKEGGSS SAPAAPATAA TVVTSSAPTG STFLAVQ

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MGFLKYQLPD LYIIGHINTV LEPQGNSKEG GVVVVAAAMQ HPEQGGAGIR SEMDGAFRNA  60
ALKAPVWEEV SRRESKRRPL TATRFCRKLA ELGYRRSAKK CKEKFENVDK YYRRTKEGRA  120
GRQDGKNYRF FKELEALHAA APQQNQHMAT AAPILPDPRP LAMAPAYPGA GLPDLSLSSN  180
SESESDDESD EEEDQAGGGG GRSNESMMAL FEGMIKQITE KQDATQRLRV VAAPEEGGRR  240
GGGESSAGMS RWPKEEVHAL IQLRMEKDEH CQDMGAKGPL WEDISAGMRR IGYNRSSKRC  300
KEKWENINKY FKKVKESNKR RPEDSKTCPY FHQLDAIYRK KQSAVSNAAG GCSSTASGNA  360
VAAVNASASE QHNPWRELEG KISNDFDRRH SVGGGSSDAP PGDGEVAAAS TVLDAIATTK  420
VMTQTSESLS MPSIACNLIA IGLGQKSEDN VMAMESNIQS QQTEVTATDE TDSDDIEGNY  480
TDDGDDDDGD EDDKMKYTIE FQKHKEGGSS SAPAAPATAA TVVTSSAPTG STFLAVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	242	GGRRGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372550	0.0	AK372550.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3004N20.
GenBank	AK375494	0.0	AK375494.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3095N08.
GenBank	AK376129	0.0	AK376129.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3115F22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184216.1	1e-164	trihelix transcription factor GTL1-like
Refseq	XP_020184217.1	1e-164	trihelix transcription factor GTL1-like
Swissprot	Q39117	5e-41	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	M8A0H4	0.0	M8A0H4_TRIUA; Trihelix transcription factor GT-2
STRING	TRIUR3_33826-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-43	Trihelix family protein