PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33847-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 305aa    MW: 33270.2 Da    PI: 9.0921
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33847-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF351.8e-111850234
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdae 34
                     r+e +  rqv f+kRr+g++ KA+EL v+C+ae
  TRIUR3_33847-P1 18 RVEKEGARQVCFAKRRQGLFNKANELAVMCGAE 50
                     6777889************************97 PP
2SRF-TF35.61.2e-116294234
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdae 34
                     r+e +  rqv f+kRr+g++ KA+EL v+C+ae
  TRIUR3_33847-P1 62 RVEKEGARQVCFAKRRQGLFNKANELAVMCGAE 94
                     6777889************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-4953IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.708950IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-121050IPR002100Transcription factor, MADS-box
CDDcd001205.31E-161050No hitNo description
PRINTSPR004049.0E-81131IPR002100Transcription factor, MADS-box
PfamPF003196.4E-131850IPR002100Transcription factor, MADS-box
PRINTSPR004049.0E-83146IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.8065397IPR002100Transcription factor, MADS-box
CDDcd001205.31E-165494No hitNo description
SMARTSM004326.2E-654103IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-135496IPR002100Transcription factor, MADS-box
PfamPF003193.9E-136294IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAPKRKGGNG RQKTIMRRVE KEGARQVCFA KRRQGLFNKA NELAVMCGAE GGNGRQKTIM  60
RRVEKEGARQ VCFAKRRQGL FNKANELAVM CGAEEAMAKK CVVGDQIAVW LNPKLGDMGE  120
EEMMAFAAKL MPVRAAISEC ANQVLLDLGM ENILRALQAP GVPLSQQLIG GSTFEFGSTS  180
TNTRMEMQQM HMAMPPTRGF AIGMDMHHMP MAMPPPGLAY GMNMQQILMS IPPPSGFGAG  240
MEMQQMVMVM SPQPEFVAGT EKQQVTMAMP LTEFPANVEM PPPMGIAAGI EMVQQATGTN  300
MGFPY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157127.11e-160agamous-like MADS-box protein AGL61
TrEMBLM7ZXS70.0M7ZXS7_TRIUA; MADS-box transcription factor 27
STRINGTRIUR3_33847-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-10AGAMOUS-like 61