PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33948-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 675aa    MW: 74455.9 Da    PI: 8.5254
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33948-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.57e-25119220199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   + +
  TRIUR3_33948-P1 119 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGD 209
                      99****************************963.3445679************************************************..348 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++el+++v+r+
  TRIUR3_33948-P1 210 DGELRLGVRRA 220
                      9999***9986 PP
2Auxin_resp113.81.6e-37245325182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +aha++tks+F+++YnPr s+seF+v+++k+ k++++++svG+Rfkm++e+ed++err++G+++g+ d+dp  W++SkW++L
  TRIUR3_33948-P1 245 VAHAVATKSMFQIFYNPRLSQSEFIVPYWKFTKSFSQPFSVGSRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 325
                      79*********************************************************************.9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-40113222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-44114236IPR015300DNA-binding pseudobarrel domain
CDDcd100175.80E-23117219No hitNo description
PfamPF023621.0E-22119220IPR003340B3 DNA binding domain
SMARTSM010192.3E-23119221IPR003340B3 DNA binding domain
PROSITE profilePS5086313.31119221IPR003340B3 DNA binding domain
PfamPF065074.3E-32245325IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MPRMGGVVVY LPQGHLDHLG DAPAPSPAAV PPHVFCRVVD VTLHADASTA AAVPPHVFCR  60
VVDVTLHADA STDEVYAQLS LLPENEEVVR RMREATEDGS GGEDGETVKQ RFARMPHMFC  120
KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQQRPSQELV AKDLHGTEWK FRHIYRGQPR  180
RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GELRLGVRRA IRLKNGSAFP ALYSQCSNLG  240
TLANVAHAVA TKSMFQIFYN PRLSQSEFIV PYWKFTKSFS QPFSVGSRFK MRYESEDAAE  300
RRYTGIITGT GDADPMWRGS KWKCLLVRWD DDGEFRRPNR VSPWEIELTS SASGSHLAAP  360
TSKRMKPYLP HANPEFTVPH GGGRPDFAES AQLRKVLQGQ ELLGYRTHDG TAVATSQPCE  420
ARNLQYIDER GCSNNGSNNV LGGVPSHGVR TPLGIPYHCS GFGESQRFQK VLQGQEVFRP  480
YRGSLVDARM RSGGFHQQDG PYASALLDKW RTQQQHAFGF GSSAPVLPSQ PSLSPPSVLM  540
FQQADPKVSR FEFGQGHLDK NMDDPYARFV SAEAIGRGEQ TLSLRPHLGS EVIDTRVAVE  600
NKGVAPTNSC KIFGISLAEK VRARDEMGCD DGGANYPSST QPLKQQVPKS LGNSCATVHE  660
QRPVVGRAID VQQWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-102135534361Auxin response factor 1
4ldw_A1e-102135534361Auxin response factor 1
4ldw_B1e-102135534361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761280.0AY376128.1 Triticum aestivum ETTIN-like auxin response factor (ETT1-alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158279.10.0auxin response factor 15-like
SwissprotQ8S9850.0ARFO_ORYSJ; Auxin response factor 15
TrEMBLM7ZI100.0M7ZI10_TRIUA; Auxin response factor
STRINGTRIUR3_33948-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-146ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]