PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_33993-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 117aa    MW: 13107.3 Da    PI: 8.0531
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_33993-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB145.31.4e-4516108194
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+s imkk++ an+ki+kdaketv+ec+sefi f++s+as kcqrek ktin ddllwa+atlGf++y+eplkvyl++yre++
  TRIUR3_33993-P1  16 VREQDRFLPIANISSIMKKAILANGKIAKDAKETVRECISEFI-FIASKASGKCQREKCKTINIDDLLWAMATLGFQEYIEPLKVYLQNYREVH 108
                      69****************************************9.************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-4015109IPR009072Histone-fold
SuperFamilySSF471131.18E-2719108IPR009072Histone-fold
PfamPF008081.3E-182285IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSDAPASPPG GVFGGVREQD RFLPIANISS IMKKAILANG KIAKDAKETV RECISEFIFI  60
ASKASGKCQR EKCKTINIDD LLWAMATLGF QEYIEPLKVY LQNYREVHAH LAMWDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A3e-3717106393NF-YB
4awl_B3e-3717106494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A3e-3717106494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641761e-112AK364176.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G14.
GenBankBT0090781e-112BT009078.1 Triticum aestivum clone wkm1c.pk0002.d7:fis, full insert mRNA sequence.
GenBankKM0787351e-112KM078735.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-A2) mRNA, complete cds.
GenBankKM0787361e-112KM078736.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-B2) mRNA, complete cds.
GenBankKM0787371e-112KM078737.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150941.18e-63nuclear transcription factor Y subunit B-like
SwissprotP252092e-50NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLT1NT412e-82T1NT41_TRIUA; Uncharacterized protein
STRINGTRIUR3_33993-P13e-83(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.32e-52nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]